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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 41,380
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000768
Taxonomy4558 - Sorghum bicolor
Straincv. BTx623
Last modifiedNovember 4, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000003195.3 from ENA/EMBL full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:98.9%[S:73.9%,D:25%],F:0.3%,M:0.8%,n:4896 poales_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Outlier

Sorghum bicolor (sorghum) is a food and feed cereal crop that originated in Africa and is adapted to heat and drought. It is a staple food for 500 million of the world's poorest people. Sorghum bicolor belongs to the Panicoideae which is a subfamily of the Poaceae (formerly known as the Gramineae). Maize and sugar cane are members of the same this subfamily.

Sorghum has a small diploid genome and wide phenotypic diversity which make it an attractive plant for genomic studies. Sorghum carries out carbon fixation through the C4 pathway and is an ideal grass model for comparison with rice which uses the C3 pathway.

Sorghum bicolor has a haploid chromosome number of 10, containing 530 Mb with 33,000 protein-coding genes. The genome contains a high level of repeats (61%). Despite this, a high-quality genome sequence was assembled from homozygous sorghum genotype BTx623 using the whole-genome shotgun technique.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Unassembled WGS sequence152
Chromosome 17043
Chromosome 25379
Chromosome 35703
Chromosome 44566
Chromosome 52843
Chromosome 63625
Chromosome 72847
Chromosome 82449
Chromosome 93279
Chromosome 103552
Chloroplast78
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Main funding by: National Institutes of Health

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