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StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 4,121
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000756
Taxonomy380703 - Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
StrainATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="">more...</a>)</p> GCA_000014805.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049) pan proteome (fasta)
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (M) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment, and the name of the taxonomic lineage dataset used.</p> C:100%[S:99.5%,D:0.5%],F:0%,M:0%,n:366 gammaproteobacteria_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Aeromonas spp. are ubiquitous bacteria found in diverse aquatic environments worldwide, such as bottled water, chlorinated water, well water and heavily polluted waters. Aeromonas hydrophila survives easily in waters polluted by feces and seems resistant to various disinfectants, insecticides and chemicals. High numbers of Aeromonas spp. were recorded in floodwater samples in New Orleans following hurricane Katrina and they were the most common cause of skin and soft tissue infections among the survivors of the 2004 tsunami in Thailand. Aeromonas spp. cause infections in invertebrate and vertebrate such as frogs, birds and domestic animals. Infection in various fish species can result in hemorrhagic disease and furunculosis. Although Aeromonas was originally considered an opportunistic pathogen in immunocompromised humans, increasing cases of intestinal and extraintestinal disease suggest that it is an emerging human pathogen irrespective of the host's immune system. This organism has been included in the Contaminant Candidate List by the Environmental Protection Agency.

Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) was originally isolated from "a tin of milk with a fishy odor". Its genome is comprised of a single circular 4.74 Mb-chromosome. No transposase, resolvase or insertion sequence element was found in the genome. A type II secretion system and genes homologs to the vas genes proposed to encode a prototypic type VI secretion system were identified but a type III secretion system is surprisingly absent. The genes for the polar flagellum are found in four main clusters. It seems well-equipped to counter an attack of antibacterial factors as beta-lactamases, chloramphenicol acetyltransferases and other proteins that could confer resistance to bicyclomicin, fosmidomycin and aminoglycosides are present. A peptide intake transport system may play a role in resistance to antimicrobial peptides and drug efflux transporters may confer further resistance to other classes of antibiotics and toxins. A four-gene arsenical resistance operon that may pump arsenite or antimonite out of the cell has been found. Numerous amino acid and peptide transporters and relatively few sugar uptake systems are present. Both Sec and Tat secretion systems have been identified. Complete multistep pathways for synthesizing all amino acids are predicted. A selenocysteine incorporation system, selABC, is present although only a single selenoprotein, the alpha subunit of format dehydrogenase, is predicted. A. hydrophila possesses a polyhydroxyalkanoic acid storage granule system for nitrogen limitation-induced storage and a glycogen system for carbohydrate storage and mobilization. Many chitin-degrading enzymes have been predicted in addition to the characterized extracellular chitinase Chi192 and chitobiase.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
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