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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 3,495
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000740
Taxonomy416348 - Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34)
StrainATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34
Last modifiedSeptember 27, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000022205.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Halorubrum hochstenium ATCC 700873 pan proteome (fasta)

Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) is a psychrophile isolated from Deep Lake, a hypersaline lake in Antarctica. H. lacusprofundi can grow between 0 and 42 degrees Celsius with optimal growth at 31 degrees Celsius. H. lacusprofundi differs from the already sequenced Halobacterium sp. NRC-1 in that it can grow on a variety of carbon sources including glucose, mannose, acetate, and ethanol, while NRC-1 has a more limited metabolic capacity and has not been shown to use sugars. The other sequenced halophile, Haloarcula marismortui, on the other hand has been shown to use a variety of sugars. H. lacusprofundi, as a psychrophile, provides a contrast to both sequenced halophiles, and comparison of the three will highlight adaptations to low temperature. These results can be compared with those of psychrophilic methanogens to determine whether they use similar mechanisms for cold adaptation.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome 12701
Chromosome 2454
Plasmid pHLAC01353

Publications

  1. "Complete sequence of plasmid1 of Halorubrum lacusprofundi ATCC 49239."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N.
    Richardson P.
    Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases
  2. "Complete sequence of chromosome2 of Halorubrum lacusprofundi ATCC 49239."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N.
    Richardson P.
    Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases
  3. "Complete sequence of chromosome1 of Halorubrum lacusprofundi ATCC 49239."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N.
    Richardson P.
    Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases
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