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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 12,788
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000724
Taxonomy500485 - Penicillium rubens (strain ATCC 28089 / DSM 1075 / NRRL 1951 / Wisconsin 54-1255)
StrainATCC 28089 / DSM 1075 / NRRL 1951 / Wisconsin 54-1255
Last modifiedJune 28, 2020
Genome assemblyi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> from ENA/EMBL
Genome annotationi ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Penicillium rubens (strain ATCC 28089 / DSM 1075 / NRRL 1951 / Wisconsin 54-1255) (Penicillium chrysogenum) pan proteome (fasta)
BuscoC:97.2%[S:96.8%,D:0.4%],F:0.4%,M:2.4%,n:4191
CompletenessStandard

Penicillium chrysogenum is a fungus from the family Aspergillaceae found in temperate and subtropical regions. It is renowned as a source of several important Beta-lactam antibiotics including penicillin. Penicillin works by disrupting cell wall synthesis in gram-positive bacteria such as staphylococci and streptococci. It is now produced on an industrial scale and is used to treat a variety of different bacterial infections throughout the world.

The sequenced isolate Wisconsin 54-1255 is an industrial production strain of P. chrysogenum. Its nuclear genome is 32.19 Mb with 13, 653 ORFs (based on a minimum size of 100 amino acids) and the mitochondrial genome is 27,017bp with 16 protein coding genes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Contig Pc00c015
Contig Pc00c0328
Contig Pc00c0418
Contig Pc00c051
Contig Pc00c06229
Contig Pc00c0714
Contig Pc00c088
Contig Pc00c0937
Contig Pc00c101
Contig Pc00c111
Contig Pc00c121550
Contig Pc00c131538
Contig Pc00c14235
Contig Pc00c15199
Contig Pc00c161418
Contig Pc00c17108
Contig Pc00c18652
Contig Pc00c1966
Contig Pc00c201486
Contig Pc00c212280
Contig Pc00c222520
Contig Pc00c2392
Contig Pc00c24281
Contig Pc00c251
Contig Pc00c261
Contig Pc00c271
Contig Pc00c281
Contig Pc00c291
Contig Pc00c301
Contig Pc00c311
Contig Pc00c321
Contig Pc00c331
Contig Pc00c341
Contig Pc00c351
Contig Pc00c361
Contig Pc00c371
Contig Pc00c381
Contig Pc00c391
Contig Pc00c401
Contig Pc00c411
Contig Pc00c421
Contig Pc00c431
Contig Pc00c441
Contig Pc00c451
Contig Pc00c461
Contig Pc00c471
Contig Pc00c481
Contig Pc00c491
Mitochondrion16
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