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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 1,748
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000646
Taxonomy354242 - Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176)
Strain81-176
Last modifiedNovember 1, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000015525.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168) pan proteome (fasta)
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:99.4%[S:99.4%,D:0%],F:0.3%,M:0.3%,n:628 campylobacterales_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Campylobacter jejuni is a Gram-negative, microaerophilic, flagellate, spiral bacterium. Campylobacter species are the leading cause of food-borne gastroenteritis in developed countries. Infection with C. jejuni is the most frequent antecedent to a form of neuromuscular paralysis known as Guillain-Barre syndrome. Campylobacter jejuni subsp. jejuni (strain 81-176) was originally isolated from the feces of an 9-year-old girl with diarrhea as the result of an outbreak of Campylobacteriosis associated with the consumption of raw milk on a dairy farm in Minnesota, USA during a third grade class field trip in 1981. It was passaged through human volunteer trials by Black et al., in 1987 and passaged again by Dr. Patricia Guerry's group, where it is proven to still cause human gastroenteritis. It is virulent in Rhesus macaques, ferrets, intranasally in mice, and colostrum-deprived piglets. The strain invades intestinal epithelial cells at levels that are as much as 3 logs higher than other invasive strains. (Adapted from TIGR).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome1643
Plasmid pTet52
Plasmid pVir53

Publications

  1. Fouts D.E., Nelson K.E., Sebastian Y.
    Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
  2. Fouts D.E., Nelson K.E.
    Submitted (JAN-2007) to the EMBL/GenBank/DDBJ databases
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Main funding by: National Institutes of Health

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