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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 4,026
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000642
Taxonomy393305 - Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
StrainNCTC 13174 / 8081
Last modifiedAugust 21, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000009345.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Yersinia pestis pan proteome (fasta)
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:100%[S:99.8%,D:0.2%],F:0%,M:0%,n:440 enterobacterales_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Yersinia enterocolitica is a mammalian gastrointestinal pathogen composed of six biotypes. The biotypes group into three types of pathogen; mouse nonpathogens (biotype 1A), weak mouse pathogens (biotypes 2-5) and a mouse-lethal group (biotype 1B), of which this strain is a member. Biotype 1B is a primarily New World strain. Y.enterocolitica and Y.pseudotuberculosis are thought to have diverged in the last 200 million years, while it has been proposed that Y.pestis (the causative agent of plague) evolved from Y.pseudotuberculosis 1,500-20,000 years ago. Y.pseudotuberculosis and Y.pestis cause more severe clinical symptoms than Y.enterocolitica. The availability of representatives of all three Yersinia species has allowed comparison of gene loss and acquisitions since they diverged. It seems that despite both being enteric pathogens, Y.enterocolitica and Y.pseudotuberculosis occupy different niches as seen by differential losses of presumably adaptive functions such as cellulose biosynthetic genes (present only in Y. enterocolitica) and osmoregulated periplasmic glucan biosynthetic pathway (probably not succinylated in Y.pseudotuberculosis). Like all Yersinia, Y.enterocolitica has an approximately 70 kb virulence plasmid.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome3957
Plasmid pYVe808172
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Main funding by: National Institutes of Health

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