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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 5,328
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000593
Taxonomy298386 - Photobacterium profundum (strain SS9)
StrainATCC BAA-1253 / SS9
Last modifiedJanuary 15, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000196255.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Photobacterium profundum (strain SS9) pan proteome (fasta)
BuscoC:97.6%[S:95.8%,D:1.8%],F:1.8%,M:0.7%,n:452
CompletenessClose to Standard

This organism is a piezophile, that is it lives under high pressure, having been isolated at a depth of 2500 m. It grows over a broad (90 MPa) pressure range and is amenable to genetic manipulation. Like other Vibrionaceae it has 2 circular chromosomes and a 80 kb plasmid. It encodes two complete operons for F1F0 ATP synthase, one on each chromosome as well as three complete sets of cbb3 cytochrome oxidase genes; the one on chr. 2 was possibly acquired from an aproteobacterium, along with an unusual diheme cytochrome c gene. These findings support the idea that modified electron and proton transport are necessary for metabolic activity at high pressure. Confirmation that SS9 is a true piezophile comes from the observation that several stress-response genes are activated at atmospheric pressure (adapted from PubMed 15746425).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 13351
Chromosome 21939
Plasmid pPBPR167

Publications

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