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Overview

StatusReference proteome
Proteinsi4,760
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000591
Taxonomy284811 - Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
StrainATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056
Last modifiedFebruary 27, 2018
Genome assembly and annotationi GCA_000091025.4 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (Yeast) (Eremothecium gossypii) pan proteome (fasta)

Ashbya gossypii is a filamentous fungus that belongs to the order Saccharomycetales in the phylum Ascomycota. It is used as a model organism for studying filamentous growth because of the small size of the genome, its haploidy and ease of culturing. A. gossypii is also used commercially for the production of vitamin B2.

The genome sequence was published in 2004. It comprises 9.2 Mb in seven chromosomes containing 4,718 predicted protein-coding genes. The Ashbya gossypii genome project was initiated when the conservation of gene order and orientation (synteny) compared to Saccharomyces cerevisiae was noted.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome I383
Chromosome II466
Chromosome III498
Chromosome IV824
Chromosome V813
Chromosome VI998
Chromosome VII784
Mitochondrion8

Publications

  1. "The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome."
    Dietrich F.S., Voegeli S., Brachat S., Lerch A., Gates K., Steiner S., Mohr C., Poehlmann R., Luedi P., Choi S., Wing R.A., Flavier A., Gaffney T.D., Philippsen P.
    Science 2004:304-307(2004) [PubMed] [Europe PMC] [Abstract]
  2. "Genomes of Ashbya fungi isolated from insects reveal four mating-type loci, numerous translocations, lack of transposons, and distinct gene duplications."
    Dietrich F.S., Voegeli S., Kuo S., Philippsen P.
    G3 (Bethesda) 2013:1225-1239(2013) [PubMed] [Europe PMC] [Abstract]
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