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Overview

StatusReference proteome
Proteinsi3,783
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000584
Taxonomy243277 - Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
StrainATCC 39315 / El Tor Inaba N16961
Last modifiedFebruary 27, 2018
Genome assembly and annotationi GCA_000006745.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) pan proteome (fasta)

Vibrio species represent a significant portion of the culturable heterotrophic bacteria of oceans, coastal waters and estuaries. Various species of this genus are devastating pathogens for finfish, shellfish and mammals.

A Gram-negative, rod-shaped bacterium, V.cholerae is the etiological agent of cholera, a severe diarrheal disease that occurs most frequently in epidemic form. Cholera has been epidemic in southern Asia for at least 1000 years; epidemics are usually associated with poor sanitary conditions. Vibrio cholerae as a species includes both pathogenic and non pathogenic strains that vary in their virulence and gene content. There are 2 major serogroups that cause epidemic cholera, O1 and O139. Serogroup O1 is further classified into two biotypes, classical and El Tor, and into two major serotypes, Inaba and Ogawa. Analysis of epidemic O1 strains that caused cholera outbreaks in Latin America in 1991 revealed that the El Tor Inaba strains were unique to Latin America. O1 strains may exhibit serotype conversion or switching between Inaba and Ogawa serotypes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome 12724
Chromosome 21064
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Main funding by: National Institutes of Health

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