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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 5,003
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000565
Taxonomy290402 - Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)
StrainATCC 51743 / NCIMB 8052
Last modifiedAugust 9, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000016965.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium acetobutylicum) pan proteome (fasta)

Clostridium beijerinckii species are ubiquitous in nature and routinely isolated from soil samples. C. beijerinckii NCIMB 8052 is a saccharolytic, strictly anaerobic, mesophyllic, motile, rod-shaped bacteria with oval, sub-terminal spores. It exhibits peritrichous flagella. During fermentation, it produces a number of products including acetate, butyrate, lactate, hydrogen gas, carbon dioxide, acetone, butanol, ethanol, acetoin and acetyl methyl carbonil. It is this capacity for solvent production (especially butanol, acetone, and isopropanol) that makes it biotechnologically interesting. It grows well and is easy to handle in simple, inexpensive media that is realistic for industrial use. The morphology of the cell changes over the growth cycle of the organism; at early exponential phase, the cells are long, filamentous and very motile. As the culture approaches the solventogenic stage, which corresponds with the stationary phase, cells shorten, become plumper and exhibit a lower level of motility (modified from genome.jgi-psf.org/finished_microbes/clobe/clobe.home.html).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome5003

Publications

  1. "Single-nucleotide resolution analysis of the transcriptome structure of Clostridium beijerinckii NCIMB 8052 using RNA-Seq."
    Wang Y., Li X., Mao Y., Blaschek H.P.
    BMC Genomics 2011:479-479(2011) [PubMed] [Europe PMC] [Abstract]
  2. "Genome-wide dynamic transcriptional profiling in clostridium beijerinckii NCIMB 8052 using single-nucleotide resolution RNA-Seq."
    Wang Y., Li X., Mao Y., Blaschek H.P.
    BMC Genomics 2012:102-102(2012) [PubMed] [Europe PMC] [Abstract]
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