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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 6,806
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000561
Taxonomy237631 - Ustilago maydis (strain 521 / FGSC 9021)
Strain521 / FGSC 9021
Last modifiedJanuary 15, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000328475.2 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Ustilago maydis (strain 521 / FGSC 9021) (Corn smut fungus) pan proteome (fasta)
BuscoC:99.3%[S:99%,D:0.3%],F:0.6%,M:0.1%,n:1335
CompletenessStandard

Ustilago maydis, commonly known as corn smut, belongs to the order Ustilaginales in the phylum Basidiomycota. As a biotroph, it is of economic importance due to its destructive potential as a plant pathogen. Infection of the host, maize, occurs through tissue above ground and can affect all tissues; the resulting galls are considered a delicacy called huitlacoche in Central America. U. maydis is an established model organism for studying plant-microbe interactions. The genome of strain 521 was published in 2006. It comprises about 21 Mb and almost 7,000 predicted protein-coding genes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Mitochondrion26
Chromosome 1877
Chromosome 2651
Chromosome 3632
Chromosome 4273
Chromosome 5504
Chromosome 6335
Chromosome 7331
Chromosome 8275
Chromosome 9258
Chromosome 10237
Chromosome 11239
Chromosome 12221
Chromosome 13207
Chromosome 14185
Chromosome 15185
Chromosome 16185
Chromosome 17200
Chromosome 18186
Chromosome 19200
Chromosome 20189
Chromosome 21166
Chromosome 22123
Chromosome 23114
Unassembled WGS sequence347

Publications

  1. Gueldener U., Muensterkoetter M., Walter M.C., Mannhaupt G., Kahmann R.
    Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases
  2. "Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis."
    Kaemper J., Kahmann R., Boelker M., Ma L.-J., Brefort T., Saville B.J., Banuett F., Kronstad J.W., Gold S.E., Mueller O., Perlin M.H., Woesten H.A.B., de Vries R., Ruiz-Herrera J., Reynaga-Pena C.G., Snetselaar K., McCann M., Perez-Martin J.
    Birren B.W.
    Nature 444:97-101(2006) [PubMed] [Europe PMC] [Abstract]
  3. "Annotation of mitochondrial genome of Ustilago maydis and comparative analysis of basidiomycete mtDNAs."
    Kennell J.C., Boehmer C.
    Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
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