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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 10,558
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000560
Taxonomy227321 - Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
StrainFGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139
Last modifiedJune 28, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000011425.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans) pan proteome (fasta)
BuscoC:94.2%[S:94%,D:0.2%],F:2%,M:3.8%,n:4191
CompletenessStandard

Aspergillus nidulans, also known as Emericella nidulans when referring to its sexual form, or teleomorph, is a filamentous Ascomycete that is normally haploid but can be induced to grow as a heterokaryon or a diploid. It produces both sexual and asexual spores, whereas most other Aspergillus fungi are asexual. Aspergillus nidulans is an important model organism for studies in cell biology and in vaccine and drug development.

The Aspergillus nidulans genome is approximately 31 Mb, organized in 8 chromosomes. It contains an estimated of 11,000-12,000 genes.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome I1321
Mitochondrion20
Chromosome II1427
Chromosome III1198
Chromosome IV1004
Chromosome V1111
Chromosome VI1160
Chromosome VII1569
Chromosome VIII1755

Publications

  1. "The 2008 update of the Aspergillus nidulans genome annotation: a community effort."
    Wortman J.R., Gilsenan J.M., Joardar V., Deegan J., Clutterbuck J., Andersen M.R., Archer D., Bencina M., Braus G., Coutinho P., von Dohren H., Doonan J., Driessen A.J., Durek P., Espeso E., Fekete E., Flipphi M., Estrada C.G.
    Turner G.
    Fungal Genet. Biol. 46:S2-13(2009) [PubMed] [Europe PMC] [Abstract]
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