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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 6,035
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000559
Taxonomy237561 - Candida albicans (strain SC5314 / ATCC MYA-2876)
StrainSC5314 / ATCC MYA-2876
Last modifiedJuly 7, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000182965.3 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Candida albicans (strain SC5314 / ATCC MYA-2876) (Yeast) pan proteome (fasta)
BuscoC:98.8%[S:98.4%,D:0.5%],F:0.7%,M:0.5%,n:2137
CompletenessStandard

Candida albicans belongs to the order Saccharomycetales in the phylum Ascomycota. A normal inhabitant of mucosal membranes in human, it is also a commonly encountered pathogen causing infections of both skin and mucosa. While such infections are usually local and easily treated in immunocompetent individuals, they can be systemic and life-threatening in immunocompromised persons. C. albicans is diploid and exhibits considerable natural heterozygosity. It is also dimorphic with a unicellular (yeast) form and a multicellular (hyphal) form that is associated with pathogenicity.

The genome sequence of strain SC5314 was published in 2004. Most genes do not contain introns. The codon CUG is translated as serine rather than leucine.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 11354
Chromosome 2997
Chromosome 3734
Chromosome 4654
Chromosome 5506
Chromosome 6424
Chromosome 7393
Chromosome R961
Mitochondrion14

Publications

  1. "Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure."
    Muzzey D., Schwartz K., Weissman J.S., Sherlock G.
    Genome Biol. 14:RESEARCH97.1-RESEARCH97.14(2013) [PubMed] [Europe PMC] [Abstract]
  2. "Infrequent genetic exchange and recombination in the mitochondrial genome of Candida albicans."
    Anderson J.B., Wickens C., Khan M., Cowen L.E., Federspiel N.A., Jones T., Kohn L.M.
    J. Bacteriol. 183:865-872(2001) [PubMed] [Europe PMC] [Abstract]
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