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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 7,255
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000552
Taxonomy266835 - Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)
StrainLMG 29417 / CECT 9101 / MAFF 303099
Last modifiedMarch 21, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000009625.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) (Mesorhizobium loti (strain MAFF 303099)) pan proteome (fasta)
BuscoC:98.7%[S:98.4%,D:0.3%],F:0.5%,M:0.8%,n:639
CompletenessClose to Standard

Gram-negative nitrogen-fixing bacteria living in soil and able to establish a symbiosis with host plants from the genera Lotus, Anthyllis and Lupinus leading to the formation of nodules on roots. Nodulation and nitrogen fixation genes of Mesorhizobium loti are encoded on the chromosome of the bacterium. For a map of the complete genome see Kaneko T., et al., (2000) DNA Res. 7:381-406 (PMID 11214974).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome6730
Plasmid pMLa319
Plasmid pMLb209
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Main funding by: National Institutes of Health

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