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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 6,272
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000453
Taxonomy543728 - Variovorax paradoxus (strain S110)
StrainS110
Last modifiedSeptember 30, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000023345.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Variovorax paradoxus pan proteome (fasta)

Variovorax paradoxus is a ubiquitous, aerobic, gram negative bacterium present in diverse environments. This organism has been associated with a number of interesting biotransformations, including atrazine degradation, nitrotyrosine assimilation, and mineralization of acyl-homoserine lactone signals. It is able to grow autotrophically using hydrogen gas and carbon dioxide for energy and carbon and has been implicated in plant growth promotion, as part of the rhizosphere consortium with nodulating diazotrophs. This microorganism was also recently identified as a member of methylotrophic community in the human oral cavity (adapted from PMID 19523213). Variovorax paradoxus (strain S110) is a frequently enriched in biodegradative enrichments from heavily contaminated sites. It is one of 2 (December 2010) sequenced V.paradoxus strains. This strain has 2 chromosomes, whereas the other strain, EPS, has only 1 chromosome.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome 15236
Chromosome 21037

Publications

  1. "Complete genome sequence of the metabolically versatile plant growth-promoting endophyte, Variovorax paradoxus S110."
    Han J.I., Choi H.K., Lee S.W., Orwin P.M., Kim J., Laroe S.L., Kim T.G., O'Neil J., Leadbetter J.R., Lee S.Y., Hur C.G., Spain J.C., Ovchinnikova G., Goodwin L., Han C.
    J. Bacteriol. 2011:1183-1190(2011) [PubMed] [Europe PMC] [Abstract]
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