Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 2,858
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000447
Taxonomy309801 - Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2)
StrainATCC 27502 / DSM 5159 / P-2
Last modifiedSeptember 28, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000021685.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the bacterium HR28 pan proteome (fasta)

T.roseum is a non-motile, red-pigmented, rod-shaped, Gram-negative extreme thermophile. The type strain, DSM 5159 was isolated from Toadstool Spring, an alkaline siliceous hot spring in Yellowstone National Park USA. It grows optimally at 70-75 degrees C and pH 8.2-8.5. It possesses both an atypical cell wall dominated by a protein rich in proline, glutamate, glycine, and alanine, and an unusual cell membrane that is composed entirely of long-chain 1,2-diols. It contains a small amount of peptidoglycan which is probably essential as T.roseum is sensitive to penicillin. T. roseum is a deep-branching member of the Chloroflexi and analysis of its genome provides insights into the evolution of the Chloroflexi. It has a chromosome of just over 2 Mb and a megaplasmid of just under 1Mb. It is not photosynthetic but can use CO, and possibly H(2) as sources of both ATP and NADPH. Intriguingly the megaplasmid encodes what seems to be a complete flagellar apparatus, although this bacterium is not known to be motile, and it has a considerable number of genes predicted to be involved in chemotaxis (adapted from PubMed 19148287).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome1921
Plasmid Tros937

Publications

  1. "Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum."
    Wu D., Raymond J., Wu M., Chatterji S., Ren Q., Graham J.E., Bryant D.A., Robb F., Colman A., Tallon L.J., Badger J.H., Madupu R., Ward N.L., Eisen J.A.
    PLoS ONE 2009:E4207-E4207(2009) [PubMed] [Europe PMC] [Abstract]
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again