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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 3,085
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000434
Taxonomy269800 - Thermobifida fusca (strain YX)
StrainYX
Last modifiedMarch 7, 2021
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000012405.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Thermobifida fusca (strain YX) pan proteome (fasta)
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:93%[S:92.9%,D:0.1%],F:0.3%,M:6.6%,n:1162 streptosporangiales_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Close to standard (low value)

Thermobifida fusca, formerly known as Thermomonaspora fusca, is a moderate thermophilic soil bacterium (growth temperature 55 degrees Celsius) that is a major degrader of plant cell walls in heated organic materials such as compost heaps, rotting hay, manure piles or mushroom growth medium. It produces spores, which can be allergenic and causes the Farmer's lung disease (extrinsic allergic alveolitis). Its extracellular enzymes, including cellulases, have been studied because of their thermostability, broad pH range and high activity. It appears to degrade all major plant cell wall polymers except lignin and pectin and is able to grow on most simple sugars and carboxylic acids. Six different cellulases have been identified. Secreted cellulases have great biotechnological promise for utilization in the degradation of agricultural products and waste to produce sugars that can be subsequently converted to ethanol. Thermobifida fusca has a complete set of proteins comprising a sec system as well as the TAT system. Eight ABC disaccharide transporter cassettes were identified. A siderophore transport system, a siderophore biosynthesis cluster as well as a ferrous iron transport protein were identified. There are also four additional heavy metal transport systems. Thermobifida fusca is able to synthesize and metabolize saturated and unsaturated fatty acids, as well as phospholipids, glycolipids and isoprenoids.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome3085

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