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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 5,071
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000426
Taxonomy205918 - Pseudomonas syringae pv. syringae (strain B728a)
StrainB728a
Last modifiedNovember 9, 2018
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000012245.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) pan proteome (fasta)

Pseudomonas syringae produces different symptoms depending on the host species and the site of infection. Considerable variation occurs both between and within different pathovars of P.syringae. Pseudomonas syringae pv.syringae (strain B728a) exhibits a very pronounced epiphytic phase on plants. It achieves and maintains large populations on healthy plants, where they are exposed to stressful conditions such as dryness and sunlight. Epiphytic Pseudomonas syringae pv. syringae populations serve as inocula that can subsequently invade plants and initiate disease. These strains are distinct from many P.syringae strains, such as P.syringae pv. tomato (strain DC3000), which poorely colonize the exterior of plants. Strain B728a can exploit at least two habitats: the leaf surface and apoplast.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome5071
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Main funding by: National Institutes of Health

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