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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 14,787
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000311
Taxonomy104421 - Camponotus floridanus
StrainC129
Last modifiedMay 4, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000147175.1 from ENA/EMBL full
BuscoC:87.3%[S:86.9%,D:0.5%],F:4.7%,M:8%,n:5991
CompletenessStandard

Camponotus floridanus (Formicidae) is one of the Camponotus species which is commonly referred to as the Florida carpenter ant. They often build their nests in wooden man-made structures and can cause major structural damage, to the extent where they are one of the most serious indoor pest species in their range of distribution from North Carolina to Florida and west to Mississippi.

The genome of C. floridanus (estimated 240mb) contains a high number of ant-specific (690) and species specific protein families (3,230). Ant-specific genes include those associated with the sensory perception of smell, G protein-coupled receptor activity and proteins involved in detoxification. In major and minor workers of this species there was also a 4-fold difference in the expression levels of several genes suggesting that the behaviour differences between the different castes may be partly encoded at the transcriptional level.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Unassembled WGS sequence14787

Publications

  1. "Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator."
    Bonasio R., Zhang G., Ye C., Mutti N.S., Fang X., Qin N., Donahue G., Yang P., Li Q., Li C., Zhang P., Huang Z., Berger S.L., Reinberg D., Wang J., Liebig J.
    Science 329:1068-1071(2010) [PubMed] [Europe PMC] [Abstract]
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