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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 4,708
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000270
Taxonomy438753 - Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571)
StrainATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571
Last modifiedJanuary 15, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000010525.1 from ENA/EMBL full
BuscoC:96.4%[S:94.8%,D:1.6%],F:2.9%,M:0.7%,n:686
CompletenessStandard

Azorhizobium caulinodans strain ORS571 is a microsymbiont of the water-tolerant tropical legume Sesbania rostrata, forming N2-fixing nodules not only on the roots but also on the stems. It contains nod, nif, and fix genes and so probably initiates nodulation like many of the rhizobia. A.caulinodans ORS571 is able to fix nitrogen in the free-living state, which is not the case for most rhizobia.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome4708

Publications

  1. "Complete genome sequence of the nitrogen-fixing bacterium Azorhizobium caulinodans ORS571."
    Lee K.B., Backer P.D., Aono T., Liu C.T., Suzuki S., Suzuki T., Kaneko T., Yamada M., Tabata S., Kupfer D.M., Najar F.Z., Wiley G.B., Roe B., Binnewies T., Ussery D., Vereecke D., Gevers D., Holsters M., Oyaizu H.
    Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
  2. "Involvement of the azorhizobial chromosome partition gene (parA) in the onset of bacteroid differentiation during Sesbania rostrata stem nodule development."
    Liu CT., Lee KB., Wang YS., Peng MH., Lee KT., Suzuki S., Suzuki T., Oyaizu H.
    Appl. Environ. Microbiol. 77:4371-4382(2011) [PubMed] [Europe PMC] [Abstract]
  3. "phrR-like gene praR of Azorhizobium caulinodans ORS571 is essential for symbiosis with Sesbania rostrata and is involved in expression of reb genes."
    Akiba N., Aono T., Toyazaki H., Sato S., Oyaizu H.
    Appl. Environ. Microbiol. 76:3475-3485(2010) [PubMed] [Europe PMC] [Abstract]
  4. "Comparative genome-wide transcriptional profiling of Azorhizobium caulinodans ORS571 grown under free-living and symbiotic conditions."
    Tsukada S., Aono T., Akiba N., Lee KB., Liu CT., Toyazaki H., Oyaizu H.
    Appl. Environ. Microbiol. 75:5037-5046(2009) [PubMed] [Europe PMC] [Abstract]
  5. "Rhizobial factors required for stem nodule maturation and maintenance in Sesbania rostrata-Azorhizobium caulinodans ORS571 symbiosis."
    Suzuki S., Aono T., Lee KB., Suzuki T., Liu CT., Miwa H., Wakao S., Iki T., Oyaizu H.
    Appl. Environ. Microbiol. 73:6650-6659(2007) [PubMed] [Europe PMC] [Abstract]
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