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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 3,521
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000245
Taxonomy349163 - Acidiphilium cryptum (strain JF-5)
StrainJF-5
Last modifiedJanuary 15, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000016725.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Acidiphilium cryptum (strain JF-5) pan proteome (fasta)
BuscoC:98.6%[S:98.2%,D:0.5%],F:0.9%,M:0.5%,n:221
CompletenessStandard

Acidiphilium cryptum (strain JF-5) is an acidophilic dissimilatory iron-reducing bacterium (DIRB) of the alpha subdivision of the Proteobacteria. This bacteria is detected in a variety of extreme low pH, radionuclide- and heavy-metal contaminated habitats where Fe(III) reduction is taking place, and may represent a significant proportion of metal-transforming organisms in these environments. Strain JF-5 serves as a model organism for facultative iron-respiring Alphaproteobacterium. It utilizes glucose as an electron donor with the concomitant reduction of soluble and solid-phase Fe(III). Major findings for this bacterium are a novel outer-membrane cytochrome c involved in iron respiration and a Cr(VI) reductase enzyme.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome3053
Plasmid pACRY01160
Plasmid pACRY02169
Plasmid pACRY0377
Plasmid pACRY0432
Plasmid pACRY0528
Plasmid pACRY069
Plasmid pACRY075
Plasmid pACRY085

Publications

  1. "Complete sequence of plasmid2 pACRY02 of Acidiphilium cryptum JF-5."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    Richardson P.
    Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
  2. "Complete sequence of plasmid7 pACRY07 of Acidiphilium cryptum JF-5."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    Richardson P.
    Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
  3. "Complete sequence of plasmid1 pACRY01 of Acidiphilium cryptum JF-5."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    Richardson P.
    Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
  4. "Complete sequence of plasmid3 pACRY03 of Acidiphilium cryptum JF-5."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    Richardson P.
    Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
  5. "Complete sequence of plasmid4 pACRY04 of Acidiphilium cryptum JF-5."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    Richardson P.
    Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
  6. "Complete sequence of plasmid5 pACRY05 of Acidiphilium cryptum JF-5."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    Richardson P.
    Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
  7. "Complete sequence of plasmid8 pACRY08 of Acidiphilium cryptum JF-5."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    Richardson P.
    Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
  8. "Complete sequence of plasmid6 pACRY06 of Acidiphilium cryptum JF-5."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    Richardson P.
    Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
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