Proteomes - Acidiphilium cryptum (strain JF-5)
Overview
| Status | Reference proteome |
| Proteinsi | 3,521 |
| Proteome IDi | UP000000245 |
| Taxonomy | 349163 - Acidiphilium cryptum (strain JF-5) |
| Strain | JF-5 |
| Last modified | January 15, 2020 |
| Genome assembly and annotationi | GCA_000016725.1 from ENA/EMBL full |
| Pan proteomei | This proteome is part of the Acidiphilium cryptum (strain JF-5) pan proteome (fasta) |
| Busco | C:98.6%[S:98.2%,D:0.5%],F:0.9%,M:0.5%,n:221 |
| Completeness | Standard |
Acidiphilium cryptum (strain JF-5) is an acidophilic dissimilatory iron-reducing bacterium (DIRB) of the alpha subdivision of the Proteobacteria. This bacteria is detected in a variety of extreme low pH, radionuclide- and heavy-metal contaminated habitats where Fe(III) reduction is taking place, and may represent a significant proportion of metal-transforming organisms in these environments. Strain JF-5 serves as a model organism for facultative iron-respiring Alphaproteobacterium. It utilizes glucose as an electron donor with the concomitant reduction of soluble and solid-phase Fe(III). Major findings for this bacterium are a novel outer-membrane cytochrome c involved in iron respiration and a Cr(VI) reductase enzyme.
Componentsi
| Chromosome | 3053 | |||
| Plasmid pACRY01 | 160 | |||
| Plasmid pACRY02 | 169 | |||
| Plasmid pACRY03 | 77 | |||
| Plasmid pACRY04 | 32 | |||
| Plasmid pACRY05 | 28 | |||
| Plasmid pACRY06 | 9 | |||
| Plasmid pACRY07 | 5 | |||
| Plasmid pACRY08 | 5 |
Publications
- "Complete sequence of plasmid2 pACRY02 of Acidiphilium cryptum JF-5."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M. Richardson P.
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases - "Complete sequence of plasmid7 pACRY07 of Acidiphilium cryptum JF-5."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M. Richardson P.
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases - "Complete sequence of plasmid1 pACRY01 of Acidiphilium cryptum JF-5."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M. Richardson P.
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases - "Complete sequence of plasmid3 pACRY03 of Acidiphilium cryptum JF-5."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M. Richardson P.
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases - "Complete sequence of plasmid4 pACRY04 of Acidiphilium cryptum JF-5."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M. Richardson P.
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases - "Complete sequence of plasmid5 pACRY05 of Acidiphilium cryptum JF-5."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M. Richardson P.
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases - "Complete sequence of chromosome of Acidiphilium cryptum JF-5."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M. Richardson P.
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases - "Complete sequence of plasmid8 pACRY08 of Acidiphilium cryptum JF-5."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M. Richardson P.
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases - "Complete sequence of plasmid6 pACRY06 of Acidiphilium cryptum JF-5."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M. Richardson P.
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
