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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 4,092
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000233
Taxonomy379731 - Pseudomonas stutzeri (strain A1501)
StrainA1501
Last modifiedJuly 5, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000013785.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Pseudomonas stutzeri (strain A1501) pan proteome (fasta)
BuscoC:97.1%[S:97.1%,D:0%],F:0.9%,M:2%,n:782
CompletenessStandard

Pseudomonas stutzeri (strain A1501) is an aerobic bacterium phylogenetically associated with the gamma subdivision of the Proteobacteria. This strain was isolated from rice roots that had been inoculated with strain A15 in a rice paddy in China. It is considered wild-type, has been studied for the nitrogen-fixation process and is used as an inoculant during rice cultivation.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome4092

Publications

  1. "Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501."
    Yan Y., Yang J., Dou Y., Chen M., Ping S., Peng J., Lu W., Zhang W., Yao Z., Li H., Liu W., He S., Geng L., Zhang X., Yang F., Yu H., Zhan Y., Li D.
    Jin Q.
    Proc. Natl. Acad. Sci. U.S.A. 105:7564-7569(2008) [PubMed] [Europe PMC] [Abstract]
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