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Plant protein annotation project

Statistics

UniProt release 2019_08 - Sep-18, 2019 contains a total of 560,823 reviewed entries, which includes 40,084 entries from 2,009 species of Viridiplantae.

Arabidospis thaliana - 15,892 reviewed entries.

Number of canonical and isoform protein sequences: organism:3702 reviewed:yes (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 43.5%
at transcript level 42.5%
inferred from homology 10.2%
predicted 3.1%
uncertain 0.7%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 15,892 13,266 unique 100%
Alternative products 3,158 0 19.9%
General annotation 15,317 71,581 96.4%
Function 11,121 11,238 70%
Catalytic activity 4,322 5,730 27.2%
Subcellular location 11,971 25,212 N/A
Sequence annotation 15,292 144,507 96.2%
Amino acid modifications 4,983 18,967 31.4%
Natural Variant 128 815 0.8%
Cross-references 15,892 0 100%
EMBL 15,862 0 99.8%
InterPro 15,388 0 96.8%
PDB 659 0 4.1%
RefSeq 15,570 0 98%
TAIR 14,642 0 92.1%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

94.6% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 4,051 reviewed entries.

Number of canonical and isoform protein sequences: organism:39947 reviewed:yes (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 19.2%
at transcript level 63.8%
inferred from homology 16.4%
predicted 0.3%
uncertain 0.3%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 4,051 1,858 unique 100%
Alternative products 294 0 7.3%
General annotation 3,977 17,769 98.2%
Function 3,209 3,239 79.2%
Catalytic activity 1,392 1,861 34.4%
Subcellular location 2,877 uniprot:(organism:39947 reviewed:yes) 71%
Sequence annotation 3,818 31,521 94.2%
Amino acid modifications 811 2,557 20%
Natural Variant 9 24 0.2%
Cross-references 4,051 0 100%
EMBL 4,051 0 100%
InterPro 4,022 0 99.3%
PDB 73 0 1.8%
RefSeq 3,525 0 87%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.6% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 844 reviewed entries.

Number of canonical and isoform protein sequences: organism:39946 reviewed:yes (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.9%
at transcript level 27.3%
inferred from homology 62.4%
predicted 1.3%
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 844 261 unique 100%
Alternative products 8 0 0.9%
General annotation 839 3,094 99.4%
Function 717 728 85%
Catalytic activity 256 337 30.3%
Subcellular location 677 1,317 80.2%
Sequence annotation 786 5,889 93.1%
Amino acid modifications 151 448 17.9%
Natural Variant 5 8 0.6%
Cross-references 844 0 100%
EMBL 844 0 100%
InterPro 828 0 98.1%
PDB 4 0 0.5%
RefSeq 71 0 8.4%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

97.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.

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