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Protein
Submitted name:

Mesenchyme homeobox 1

Gene
N/A
Organism
Astyanax mexicanus (Blind cave fish) (Astyanax fasciatus mexicanus)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi170 – 229HomeoboxPROSITE-ProRule annotationAdd BLAST60

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Mesenchyme homeobox 1Imported
OrganismiAstyanax mexicanus (Blind cave fish) (Astyanax fasciatus mexicanus)Imported
Taxonomic identifieri7994 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCharaciformesCharacoideiCharacidaeCharacidae incertae sedisAstyanax cladeAstyanax
Proteomesi
  • UP000018467 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini168 – 228HomeoboxInterPro annotationAdd BLAST61

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili168 – 188Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis, HomeoboxPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

GeneTreeiENSGT00760000118940.
OMAiWHFPVSE.
OrthoDBiEOG091G0PFO.

Family and domain databases

CDDicd00086. homeodomain. 1 hit.
InterProiView protein in InterPro
IPR009057. Homeobox-like_sf.
IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
PfamiView protein in Pfam
PF00046. Homeobox. 1 hit.
PRINTSiPR00024. HOMEOBOX.
SMARTiView protein in SMART
SM00389. HOX. 1 hit.
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiView protein in PROSITE
PS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.

Sequencei

Sequence statusi: Complete.

W5KPS3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDQPASSCMR SSHPGSSLWG CVRGPQPVGT SGPAGPYQQA PFSLHQKPDF
60 70 80 90 100
LAYTDFSGSC LVPAPHVYPR EDRLYPDPHS AAYQRTEWQF STCEPRVRGQ
110 120 130 140 150
EPCQAAVGGG ADMDSAGADR LPGTVTAALD GEYSPQSMGT AETEKKSCKR
160 170 180 190 200
KREITDIQDS GFKADSNCKA RKERTAFTKE QLRELEAEFT HHNYLTRLRR
210 220 230 240 250
YEIAVNLDLT ERQVKVWFQN RRMKWKRVKG GQPASPHDLE ADELDSAASP

SSE
Length:253
Mass (Da):28,138
Last modified:April 16, 2014 - v1
Checksum:i75B5F1B726AF1DB9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
APWO01115929 Genomic DNA. No translation available.
APWO01115930 Genomic DNA. No translation available.
RefSeqiXP_007259201.1. XM_007259139.2.

Genome annotation databases

EnsembliENSAMXT00000009585; ENSAMXP00000009585; ENSAMXG00000009327.
GeneIDi103035291.

Similar proteinsi

Entry informationi

Entry nameiW5KPS3_ASTMX
AccessioniPrimary (citable) accession number: W5KPS3
Entry historyiIntegrated into UniProtKB/TrEMBL: April 16, 2014
Last sequence update: April 16, 2014
Last modified: January 31, 2018
This is version 28 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported