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Protein
Submitted name:

Transcription factor 12

Gene

Tcf12

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Transcription factor 12Imported
Gene namesi
Name:Tcf12Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 9

Organism-specific databases

MGIiMGI:101877. Tcf12.

PTM / Processingi

Proteomic databases

PaxDbiV9GX46.
PeptideAtlasiV9GX46.

Expressioni

Gene expression databases

ExpressionAtlasiV9GX46. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000034755.

Structurei

3D structure databases

ProteinModelPortaliV9GX46.
SMRiV9GX46. Positions 432-491.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini431 – 48454BHLH (basic helix-loop-helix)InterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 basic helix-loop-helix (bHLH) domain.UniRule annotation

Phylogenomic databases

eggNOGiKOG3910. Eukaryota.
ENOG410XYUA. LUCA.
GeneTreeiENSGT00510000046438.

Family and domain databases

Gene3Di4.10.280.10. 1 hit.
InterProiIPR011598. bHLH_dom.
[Graphical view]
PfamiPF00010. HLH. 1 hit.
[Graphical view]
SMARTiSM00353. HLH. 1 hit.
[Graphical view]
SUPFAMiSSF47459. SSF47459. 1 hit.
PROSITEiPS50888. BHLH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

V9GX46-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYCAYPVPGM GNNSLMYYYN GKTVYAPSPN SDDFNRESPS YPSPKPPTSM
60 70 80 90 100
FASTFFMQDG THSSSDLWSS SNGMSQPGFG GILGTSTSHM SQSSSYGSLH
110 120 130 140 150
SHDRLSYPPH SVSPTDINTS LPPMSSFHRG STSSSPYVAA SHTPPINGSD
160 170 180 190 200
SILGTRGNAA GSSQTGDALG KALASIYSPD HTSSSFPSNP STPVGSPSPL
210 220 230 240 250
TGTSQWPRAG GQAPSSPSYE NSLHSLKNRV EQQLHEHLQD AMSFLKDVCE
260 270 280 290 300
QSRMEDRLDR LDDAIHVLRN HAVGPSTSLP TSHSDIHSLL GPSHNASIGN
310 320 330 340 350
LNSNYGGSSL VTNSRSASMV GTHREDSVSL NGNHSVLSST VAASNTELNH
360 370 380 390 400
KTPENFRGGV QNQSGSVVPT EIKTENKEKD ENLHEPPSSD DMKSDDESSQ
410 420 430 440 450
KDIKVSSRGR TSSTNEDEDL NPEQKIEREK ERRMANNARE RLRVRDINEA
460 470 480 490 500
FKELGRMCQL HLKSEKPQTK LLILHQAVAV ILSLEQQVRE RNLNPKAACL
510 520 530
KRREEEKVSA ASAEPPNTLP GAHPGLSEST NPMGHL
Length:536
Mass (Da):57,956
Last modified:February 19, 2014 - v1
Checksum:iAE5D8EB4FD453831
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC093483 Genomic DNA. No translation available.
AC157575 Genomic DNA. No translation available.
AC159001 Genomic DNA. No translation available.
RefSeqiNP_001240792.1. NM_001253863.1.
UniGeneiMm.171615.
Mm.480117.

Genome annotation databases

EnsembliENSMUST00000183918; ENSMUSP00000138978; ENSMUSG00000032228.
GeneIDi21406.
UCSCiuc009qpd.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC093483 Genomic DNA. No translation available.
AC157575 Genomic DNA. No translation available.
AC159001 Genomic DNA. No translation available.
RefSeqiNP_001240792.1. NM_001253863.1.
UniGeneiMm.171615.
Mm.480117.

3D structure databases

ProteinModelPortaliV9GX46.
SMRiV9GX46. Positions 432-491.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000034755.

Proteomic databases

PaxDbiV9GX46.
PeptideAtlasiV9GX46.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000183918; ENSMUSP00000138978; ENSMUSG00000032228.
GeneIDi21406.
UCSCiuc009qpd.2. mouse.

Organism-specific databases

CTDi6938.
MGIiMGI:101877. Tcf12.

Phylogenomic databases

eggNOGiKOG3910. Eukaryota.
ENOG410XYUA. LUCA.
GeneTreeiENSGT00510000046438.

Miscellaneous databases

ChiTaRSiTcf12. mouse.
SOURCEiSearch...

Gene expression databases

ExpressionAtlasiV9GX46. baseline and differential.

Family and domain databases

Gene3Di4.10.280.10. 1 hit.
InterProiIPR011598. bHLH_dom.
[Graphical view]
PfamiPF00010. HLH. 1 hit.
[Graphical view]
SMARTiSM00353. HLH. 1 hit.
[Graphical view]
SUPFAMiSSF47459. SSF47459. 1 hit.
PROSITEiPS50888. BHLH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiV9GX46_MOUSE
AccessioniPrimary (citable) accession number: V9GX46
Entry historyi
Integrated into UniProtKB/TrEMBL: February 19, 2014
Last sequence update: February 19, 2014
Last modified: July 6, 2016
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.