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Protein

50S ribosomal protein L6

Gene

rplF

Organism
Helicobacter pylori BM012S
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinUniRule annotationImported, RNA-binding, rRNA-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L6UniRule annotation
Gene namesi
Name:rplFUniRule annotation
ORF Names:U064_0306Imported
OrganismiHelicobacter pylori BM012SImported
Taxonomic identifieri1407463 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter
Proteomesi
  • UP000018543 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliV5NNM6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini11 – 82Ribosomal_L6InterPro annotationAdd BLAST72
Domaini91 – 163Ribosomal_L6InterPro annotationAdd BLAST73

Sequence similaritiesi

Belongs to the universal ribosomal protein uL6 family.UniRule annotation

Phylogenomic databases

KOiK02933

Family and domain databases

Gene3Di3.90.930.12, 2 hits
HAMAPiMF_01365_B Ribosomal_L6_B, 1 hit
InterProiView protein in InterPro
IPR000702 Ribosomal_L6
IPR020040 Ribosomal_L6_a/b-dom
IPR036789 Ribosomal_L6_a/b-dom_sf
IPR019906 Ribosomal_L6_bac-type
IPR002358 Ribosomal_L6_CS
PANTHERiPTHR11655 PTHR11655, 1 hit
PTHR11655:SF14 PTHR11655:SF14, 1 hit
PfamiView protein in Pfam
PF00347 Ribosomal_L6, 2 hits
PIRSFiPIRSF002162 Ribosomal_L6, 1 hit
PRINTSiPR00059 RIBOSOMALL6
SUPFAMiSSF56053 SSF56053, 2 hits
TIGRFAMsiTIGR03654 L6_bact, 1 hit
PROSITEiView protein in PROSITE
PS00525 RIBOSOMAL_L6_1, 1 hit

Sequencei

Sequence statusi: Complete.

V5NNM6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRIGKRIIE IPSSVQASVE GSKLLFKNSK EKHELETHNR VKITLENNQL
60 70 80 90 100
SFQPVGEDAQ SRAYWGTYGA LANNIVIGLS TGFSKTLEVN GVGYKVALGN
110 120 130 140 150
KTLDLSLGFS HPVKYPIPAG IEMVVEKNTI TIKGSDKQKV GQVAAEIRSF
160 170
RPPEPYKGKG VKYSDEVIIR KAGKTAKK
Length:178
Mass (Da):19,486
Last modified:February 19, 2014 - v1
Checksum:i7014ACBAED5B8EF3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP006889 Genomic DNA Translation: AHA89242.1
RefSeqiWP_000086592.1, NC_022911.1

Genome annotation databases

EnsemblBacteriaiAHA89242; AHA89242; U064_0306
KEGGihez:U064_0306
PATRICifig|1407463.3.peg.306

Similar proteinsi

Entry informationi

Entry nameiV5NNM6_HELPX
AccessioniPrimary (citable) accession number: V5NNM6
Entry historyiIntegrated into UniProtKB/TrEMBL: February 19, 2014
Last sequence update: February 19, 2014
Last modified: March 28, 2018
This is version 21 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

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