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Protein
Submitted name:

U6 snRNA-associated Sm-like protein LSm4

Gene

LSM4

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoproteinSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
U6 snRNA-associated Sm-like protein LSm4Imported
Gene namesi
Name:LSM4Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 19

Organism-specific databases

HGNCiHGNC:17259. LSM4.

Subcellular locationi

GO - Cellular componenti

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000130520.

PTM / Processingi

Proteomic databases

MaxQBiU3KQK1.
PaxDbiU3KQK1.
PeptideAtlasiU3KQK1.
PRIDEiU3KQK1.

Expressioni

Gene expression databases

BgeeiENSG00000130520.
ExpressionAtlasiU3KQK1. baseline and differential.

Structurei

3D structure databases

ProteinModelPortaliU3KQK1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 57SmInterPro annotationAdd BLAST57

Phylogenomic databases

eggNOGiKOG3293. Eukaryota.
ENOG4111TZU. LUCA.
GeneTreeiENSGT00610000086173.

Family and domain databases

CDDicd01723. LSm4. 1 hit.
InterProiView protein in InterPro
IPR034101. Lsm4.
IPR027141. LSm4/Sm_D1/D3.
IPR010920. LSM_dom.
IPR001163. LSM_dom_euk/arc.
PANTHERiPTHR23338. PTHR23338. 1 hit.
PfamiView protein in Pfam
PF01423. LSM. 1 hit.
SMARTiView protein in SMART
SM00651. Sm. 1 hit.
SUPFAMiSSF50182. SSF50182. 1 hit.

Sequencei

Sequence statusi: Complete.

U3KQK1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLVELKNGET YNGHLVSCDN WMNINLREVI CTSRDGDKFW RMPECYIRGS
60 70 80 90 100
TIKYLRIPDE IIDMVKEEVV AKGRGRGGLQ QQKQQKGRGM GGAGRGVFGG
110 120
RGRGGIPGTG RGQPEKKPGR QAGKQ
Length:125
Mass (Da):13,805
Last modified:November 13, 2013 - v1
Checksum:i7AE5A7F300EE2463
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC008397 Genomic DNA. No translation available.
RefSeqiNP_001239058.1. NM_001252129.1.
UniGeneiHs.515255.

Genome annotation databases

EnsembliENST00000252816; ENSP00000475950; ENSG00000130520.
GeneIDi25804.
UCSCiuc021uqn.2. human.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiU3KQK1_HUMAN
AccessioniPrimary (citable) accession number: U3KQK1
Entry historyiIntegrated into UniProtKB/TrEMBL: November 13, 2013
Last sequence update: November 13, 2013
Last modified: July 5, 2017
This is version 31 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported