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Protein

Condensin complex subunit 1

Gene

NCAPD2

Organism
Ficedula albicollis (Collared flycatcher) (Muscicapa albicollis)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processCell cycle, Cell division, DNA condensationUniRule annotation, MitosisUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Condensin complex subunit 1UniRule annotation
Gene namesi
Name:NCAPD2Imported
OrganismiFicedula albicollis (Collared flycatcher) (Muscicapa albicollis)Imported
Taxonomic identifieri59894 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaePasseriformesMuscicapidaeFicedula
Proteomesi
  • UP000016665 Componenti: Unplaced

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Interactioni

GO - Molecular functioni

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini64 – 226Cnd1_NInterPro annotationAdd BLAST163
Domaini1054 – 1213Cnd1InterPro annotationAdd BLAST160

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili483 – 510Sequence analysisAdd BLAST28

Sequence similaritiesi

Belongs to the CND1 (condensin subunit 1) family.UniRule annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

GeneTreeiENSGT00390000017108
KOiK06677
OMAiHLDGENY
OrthoDBiEOG091G00PU

Family and domain databases

Gene3Di1.25.10.10, 1 hit
InterProiView protein in InterPro
IPR011989 ARM-like
IPR016024 ARM-type_fold
IPR026971 CND1/NCAPD3
IPR032682 Cnd1_C
IPR007673 Condensin_cplx_su1
IPR024324 Condensin_cplx_su1_N
PANTHERiPTHR14222 PTHR14222, 1 hit
PTHR14222:SF2 PTHR14222:SF2, 1 hit
PfamiView protein in Pfam
PF12717 Cnd1, 1 hit
PF12922 Cnd1_N, 1 hit
PIRSFiPIRSF017127 Condensin_D2, 1 hit
SUPFAMiSSF48371 SSF48371, 4 hits

Sequencei

Sequence statusi: Complete.

U3JQH0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKAGTGEGYS QRGRPTPSPP CRCRQRCRPA AFRAAFRARG ALAVLQHFDC
60 70 80 90 100
VYSVLHHFRA VGVAVKEDAL ELMVRVVSHH SNELPAILSD SGLSRADRAA
110 120 130 140 150
HLNALKMNCY LLTGLMDAFE METCKNSLEV DPGRKNRKNH AKTSGSLWEE
160 170 180 190 200
EREPLLRLLT QLLQLDLCQL WGGLKVEEEF VSLMTGSCYR ILENPSIGLQ
210 220 230 240 250
RYRVTREAVT HLLAVALVHC DHMFSATLKI TQMLQHFEHV APVFAQAVSL
260 270 280 290 300
WAKEYGLKSL VGELLREIGQ KCLQDLTREA SGVKGYATFI SELAEQIPAL
310 320 330 340 350
VLSNMSVLLP HLDEENYMMR NAVLAAMAEV LVQVLNGDQL EEAARGTRDK
360 370 380 390 400
FLDILQAHVC DVHSFVRSRV LQLFTRIVQR KALPLTQFQS VVSLAVGRLK
410 420 430 440 450
DKSVIVVKNA IQLLAAFLSN NPFSSKLSFA DLDEPLKKEV QKLKEMRDRS
460 470 480 490 500
RPIAVAPVVA PEEEWEAMLP EVRAATQQLF QPLEEGEEEV LEIEETVERT
510 520 530 540 550
VERITELLKK LNYKSAARLT QKALCQFQGK EPFIGPGEEN EEAAILGVLK
560 570 580 590 600
RLYTGSCPGE NSEDPPHDNS SDEVEEVVQE ERPQTELVKQ EMLVQYLQDA
610 620 630 640 650
YNFSVKITEA MNLISKMMYE NSVSVVQEAI EFFVTVSQFG VPQALLGVRR
660 670 680 690 700
MLPLIWSKEP GIKEAVLNAY RQLYLSPSED SERAKAQALV HSLSLIMVDA
710 720 730 740 750
SLGTIQCLEE IISEFVQKDE IKPAVTQLLW EQFTEKSPCS SLERRAAVML
760 770 780 790 800
LGMMARGKPE IIGSNLDILV TTGLSEKACE DYRLPQEVCN VISKLASNPK
810 820 830 840 850
PALEKNSAPF RLLQNHMLFG CLSETVSKGF AQPSSHWIPF MEAAVTLIYQ
860 870 880 890 900
LAEGAEEICA DILHVCSQQA LEKLQEADEQ KADAGDSPHR VSDSAGSLPT
910 920 930 940 950
FLLLHLVSLV GQVALQQVAY LEVSVSAELR RRRILKEEKT KKQSDTSTKK
960 970 980 990 1000
QRVQSTETTM EEELGLVGAT ADDTEAELIR SICETELLDG KHLFSAFVPL
1010 1020 1030 1040 1050
VLKICNNPGL YSDSALSAAA ALTLGKLCMI SSEFCDSHLR LLFTMMEKST
1060 1070 1080 1090 1100
LPGVRSNLII AAGDLAIRFP NLVEPWTSHL YARLRDPCPS VRQTAGLVMT
1110 1120 1130 1140 1150
HLILKDMVKV KGQVSEMAAL LIDPEEAIVG VAQNFFGELA NKGNAVYNLL
1160 1170 1180 1190 1200
PDIISHLSDP NSGIEEESFH TIMRHLFSYI TKDKQTESLV EKLCQRFRTA
1210 1220 1230 1240 1250
STERQYRDLS HCLALLPVSD RGLHKLQDNY DCFADKLQDP AVYNCFQTVL
1260 1270 1280 1290 1300
ARFRRAGIKP ETKALAEELE QKLSASHNRG LDSTETCQDG SQTPMPRPAK
1310 1320 1330 1340 1350
QKPIRSSRRQ PLSPANTDDD FITPPSRTLR NQKRAQKRPA RKKATITFSS
1360 1370 1380
DEENDSEDEL SAELREEETP TKTTPITRSS ARRLR
Length:1,385
Mass (Da):154,768
Last modified:November 13, 2013 - v1
Checksum:i1B4862A7401B0ABE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AGTO01001119 Genomic DNA No translation available.
RefSeqiXP_016157852.1, XM_016302366.1

Genome annotation databases

EnsembliENSFALT00000005049; ENSFALP00000005024; ENSFALG00000004826
GeneIDi101814709
KEGGifab:101814709

Similar proteinsi

Entry informationi

Entry nameiU3JQH0_FICAL
AccessioniPrimary (citable) accession number: U3JQH0
Entry historyiIntegrated into UniProtKB/TrEMBL: November 13, 2013
Last sequence update: November 13, 2013
Last modified: May 23, 2018
This is version 32 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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