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Protein
Submitted name:

Nucleoporin 50

Gene

NUP50

Organism
Ficedula albicollis (Collared flycatcher) (Muscicapa albicollis)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Nucleoporin 50Imported
Gene namesi
Name:NUP50Imported
OrganismiFicedula albicollis (Collared flycatcher) (Muscicapa albicollis)Imported
Taxonomic identifieri59894 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaePasseriformesMuscicapidaeFicedula
Proteomesi
  • UP000016665 Componenti: Unplaced

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini336 – 469RanBD1InterPro annotationAdd BLAST134

Phylogenomic databases

GeneTreeiENSGT00440000035348.
OMAiTFLFHGN.
OrthoDBiEOG091G0HML.

Family and domain databases

Gene3Di2.30.29.30. 1 hit.
InterProiView protein in InterPro
IPR015007. NUP2/50/61.
IPR011993. PH-like_dom_sf.
IPR000156. Ran_bind_dom.
PfamiView protein in Pfam
PF08911. NUP50. 1 hit.
PF00638. Ran_BP1. 1 hit.
SMARTiView protein in SMART
SM00160. RanBD. 1 hit.
SUPFAMiSSF50729. SSF50729. 1 hit.
PROSITEiView protein in PROSITE
PS50196. RANBD1. 1 hit.

Sequencei

Sequence statusi: Complete.

U3JJF3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKRIAEKEL TDRNWDQEDE AEEVGTFSVA SEEVLKNRAI KKAKRRNVGS
60 70 80 90 100
ESESGGAFKG FKGFILPSGK GGGGFSGFGN GAGIKPLEGL SNGSSSVSST
110 120 130 140 150
PSFSSLKSTS ETQSAFGSAM SNGPSAAVFA EKNPVSPRAN GGSQPCSSGS
160 170 180 190 200
TLSTAHGSSA YHKQLAALNC SVRDWIVKHV NTNPLCDLTP IFRDYEQYLA
210 220 230 240 250
SIERQHGGSS DSGSENESSK TPGPRAVPVF GSSKLQQGST FLFSNKTEDT
260 270 280 290 300
SDKKPEAVSE KRDPLLGATS TVSLNFGKSV DSSVLGSLGS GTLSSFSFSP
310 320 330 340 350
GNSGLFGKDA NQAKSVNEAS TSLLEAQTDS GNSDDKGGEE EEEEPPKVIV
360 370 380 390 400
NEIKEDDAFY SKKCKLFYKK DNEFKEKGVG TLHLKPAGNE KTQLLVRADT
410 420 430 440 450
NLGNILLNVL IPSKMPCTRT GKNNVLIVCV PNPPIDEKNP AVPVTMLIRV
460
KTSEDADELH KILLEKKEA
Length:469
Mass (Da):49,759
Last modified:November 13, 2013 - v1
Checksum:i3FC023150C9E5D09
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AGTO01001494 Genomic DNA. No translation available.
RefSeqiXP_005040145.1. XM_005040088.1.
XP_005040146.1. XM_005040089.1.
XP_016161566.1. XM_016306080.1.

Genome annotation databases

EnsembliENSFALT00000002919; ENSFALP00000002907; ENSFALG00000002794.
GeneIDi101814519.

Similar proteinsi

Entry informationi

Entry nameiU3JJF3_FICAL
AccessioniPrimary (citable) accession number: U3JJF3
Entry historyiIntegrated into UniProtKB/TrEMBL: November 13, 2013
Last sequence update: November 13, 2013
Last modified: November 22, 2017
This is version 27 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported