Reviewed,
UniProtKB/Swiss-Prot Q9ES52 (SHIP1_MOUSE)
Last modified
November 4, 2008.
Version 54.
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Clusters with 100%,
90%,
50% identity |
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Names and origin
| Protein names | Recommended name: Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 1 EC=3.1.3.n1 Alternative name(s): SH2 domain-containing inositol-5'-phosphatase 1 SH2 domain-containing inositol phosphatase 1 Short name=SHIP-1 Inositol polyphosphate-5-phosphatase of 145 kDa Short name=SIP-145 p150Ship | ||||
| Gene names |
| ||||
| Organism | Mus musculus (Mouse) | ||||
| Taxonomic identifier | 10090 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus |
Protein attributes
| Sequence length | 1191 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Phosphatidylinositol (PtdIns) phosphatase that specifically hydrolyzes the 5-phosphate of phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) to produce PtdIns(3,4)P2, thereby negatively regulating the PI3K (phosphoinositide 3-kinase) pathways. Acts as a negative regulator of B-cell antigen receptor signaling. Mediates signaling from the FC-gamma-RIIB receptor (FCGR2B), playing a central role in terminating signal transduction from activating immune/hematopoietic cell receptor systems. Acts as a negative regulator of myeloid cell proliferation/survival and chemotaxis, mast cell degranulation, immune cells homeostasis, integrin alpha-IIb/beta-3 signaling in platelets and JNK signaling in B-cells. Regulates proliferation of osteoclast precursors, macrophage programming, phagocytosis and activation and is required for endotoxin tolerance. Involved in the control of cell-cell junctions, CD32a signaling in neutrophils and modulation of EGF-induced phospholipase C activity. Key regulator of neutrophil migration, by governing the formation of the leading edge and polarization required for chemotaxis. Modulates FCGR3/CD16-mediated cytotoxicity in NK cells. Mediates the activin/TGF-beta-induced apoptosis through its Smad-dependent expression. May also hydrolyze PtdIns(1,3,4,5)P4, and could thus affect the levels of the higher inositol polyphosphates like InsP6. |
| Catalytic activity | Phosphatidylinositol 3,4,5-trisphosphate + H(2)O = phosphatidylinositol 3,4-bisphosphate + phosphate. |
| Enzyme regulation | Activated upon translocation to the sites of synthesis of PtdIns(3,4,5)P3 in the membrane. |
| Subunit structure | Interacts with tyrosine phosphorylated forms of SHC1, DOK1, DOK3, PTPN11/SHP-2, SLAMF1/CD150. Interacts with PTPN11 in response to IL-3. Interacts with receptors EPOR, MS4A2/FCER1B and FCER1G, FCGR2A, FCGR2B and FCGR3. Interacts with GRB2 and PLCG1. Interacts with tyrosine kinases SRC and TEC. Interacts with FCGR2A, leading to regulate gene expression during the phagocytic process. Interacts with c-Met/MET. Isoform 5 interacts with IL6ST/gp130. |
| Subcellular location | Cytoplasm. Cell membrane; Peripheral membrane protein. Note= Translocates to the plasma membrane when activated, translocation is probably due to different mechanisms depending on the stimulus and cell type. Partly translocated via its SH2 domain which mediates interaction with tyrosine phosphorylated receptors such as the FC-gamma-RIIB receptor (FCGR2B) or CD16/FCGR3. Tyrosine phosphorylation may also participate to membrane localization. Isoform 5: Cell membrane; Peripheral membrane protein. Note= Constitutively present at the cell membrane. |
| Tissue specificity | Specifically expressed in immune and hematopoietic cells. Levels vary considerably within this compartment. Lost during erythropoiesis when erythroid cells become Ter119+. Increases substantially with T-cell maturation and when resting B-cells are activated. Also present in mature granulocytes, monocyte/macrophages, mast cells and platelets. Isoform 5 is the only form expressed in embryonic stem (ES) cells and is co-expressed with other isoforms in hematopoietic stem cells, and disapears with differentiation. |
| Developmental stage | Expressed in late primitive-streak stage embryos (7.5 dpc), when hematopoiesis is thought to begin, and the expression is restricted to the hematopoietic lineage in embryo. In adults expression continues to be in the majority of cells from hematopoietic origin, including granulocytes, monocytes and lymphocytes, and is also found in the spermatids of the testis. |
| Induction | By activin/TGF-beta (at protein level). Regulated by the Smad pathway. Isoform 3 is expressed during myeloid development. |
| Domain | The SH2 domain interacts with tyrosine phosphorylated forms of proteins such as SHC1 or PTPN11/SHP-2. It competes with that of GRB2 for binding to phosphorylated SHC1 to inhibit the Ras pathway. It is also required for tyrosine phosphorylation. The NPXY sequence motif found in many tyrosine-phosphorylated proteins is required for the specific binding of the PID domain. |
| Post-translational modification | Tyrosine phosphorylated by the members of the SRC family after exposure to a diverse array of extracellular stimuli such as cytokines, growth factors, antibodies, chemokines, integrin ligands and hypertonic and oxidative stress. Phosphorylated upon IgG receptor FCGR2B-binding. |
| Miscellaneous | Mice lacking Inpp5d are viable and fertile. They however fail to thrive and only 40% survive by 14 weeks of age. Mortality is associated with extensive consolidation of the lungs resulting from infiltration by myeloid cells. Increased numbers of granulocyte-macrophage progenitors are observed in both the bone marrow and spleen. Absence of Inpp5d leads to steel factor-induced degranulation of mast cells. They also display increased numbers of osteoclast precursors leading to a severe osteoporosis. |
| Sequence similarities | Belongs to the inositol-1,4,5-trisphosphate 5-phosphatase family. Contains 1 SH2 domain. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| Cd22 | P35329 | 1 | EBI-300210,EBI-300059 | |
| Grb2 | Q60631 | 1 | EBI-1452551,EBI-1688 | |
| Grb2 | Q60631 | 1 | EBI-1452545,EBI-1688 | |
| PIK3R1 | P23727 | 1 | EBI-1452545,EBI-520244 | From a different organism. |
| PIK3R1 | P23727 | 1 | EBI-1452551,EBI-520244 | From a different organism. |
| Plcg1 | Q62077 | 1 | EBI-300210,EBI-300133 | |
| Shc1 | P98083 | 1 | EBI-1452545,EBI-300201 | |
| Shc1 | P98083 | 1 | EBI-1452551,EBI-300201 |
Alternative products
| This entry describes 6 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9ES52-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9ES52-2) The sequence of this isoform differs from the canonical sequence as follows: 120-120: Missing. | ||||||
| Isoform 3 (identifier: Q9ES52-3) Also known as: 135 kDa SHIP; The sequence of this isoform differs from the canonical sequence as follows: 920-980: Missing. | ||||||
| Isoform 4 (identifier: Q9ES52-4) Also known as: SHIPdelta; The sequence of this isoform differs from the canonical sequence as follows: 120-120: Missing. 920-960: GMGPFGQPLH...DSSLGPGRGE → VFIFHSQPRS...GPAADEARDV 961-1191: Missing. | ||||||
| Isoform 5 (identifier: Q9ES52-5) Also known as: s-SHIP; The sequence of this isoform differs from the canonical sequence as follows: 1-263: Missing. | ||||||
| Notes: Constitutively present at the cell membrane. | ||||||
| Isoform 6 (identifier: Q9ES52-6) Also known as: s-SHIPD183; The sequence of this isoform differs from the canonical sequence as follows: 1-263: Missing. 920-980: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1191 | 1191 | Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 1 | PRO_0000302867 | |||||
Regions | |||||||||
| Domain | 8 – 104 | 97 | SH2 | ||||||
| Motif | 127 – 132 | 6 | SH3-binding 1 | ||||||
| Motif | 915 – 918 | 4 | NPXY motif 1 | ||||||
| Motif | 970 – 975 | 6 | SH3-binding 2 | ||||||
| Motif | 1018 – 1021 | 4 | NPXY motif 2 | ||||||
| Motif | 1039 – 1050 | 12 | SH3-binding 3 | ||||||
| Compositional bias | 962 – 1153 | 192 | Pro-rich | ||||||
Amino acid modifications | |||||||||
| Modified residue | 868 | 1 | Phosphotyrosine | ||||||
| Modified residue | 918 | 1 | Phosphotyrosine | ||||||
| Modified residue | 935 | 1 | Phosphoserine | ||||||
| Modified residue | 945 | 1 | Phosphotyrosine | ||||||
| Modified residue | 1021 | 1 | Phosphotyrosine | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 263 | 263 | Missing in isoform 5 and isoform 6. | VSP_027980 | |||||
| Alternative sequence | 120 | 1 | Missing in isoform 2 and isoform 4. | VSP_027981 | |||||
| Alternative sequence | 920 – 980 | 61 | Missing in isoform 3 and isoform 6. | VSP_027982 | |||||
| Alternative sequence | 920 – 960 | 41 | GMGPF…PGRGE → VFIFHSQPRSLPQGARGKTW GSGKGGSSAPGGPAADEARD V in isoform 4. | VSP_027983 | |||||
| Alternative sequence | 961 – 1191 | 231 | Missing in isoform 4. | VSP_027984 | |||||
Experimental info | |||||||||
| Mutagenesis | 676 | 1 | D → G: Loss of function | ||||||
| Mutagenesis | 918 | 1 | Y → F: Strongly impairs function, tyrosine phosphorylation, subcellular location and interaction with DOK1; when associated with F-1021 | ||||||
| Mutagenesis | 1021 | 1 | Y → F: Strongly impairs function, tyrosine phosphorylation, subcellular location and interaction with DOK1; when associated with F-918 | ||||||
| Sequence conflict | 43 | 1 | Y → C in AAB18937. Ref.2 | ||||||
| Sequence conflict | 527 | 1 | V → A in AAC53023. Ref.3 | ||||||
| Sequence conflict | 534 | 1 | N → I in AAC53023. Ref.3 | ||||||
| Sequence conflict | 905 | 1 | C → E AA sequence Ref.2 | ||||||
| Sequence conflict | 981 | 1 | A → T in AAB18937. Ref.2 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "p150Ship, a signal transduction molecule with inositol polyphosphate-5-phosphatase activity." Lioubin M.N., Algate P.A., Tsai S., Carlberg K., Aebersold A., Rohrschneider L.R. Genes Dev. 10:1084-1095(1996) [PubMed: 8654924] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), PROTEIN SEQUENCE OF 2-9 AND 1163-1173, FUNCTION, ENZYME ACTIVITY, PHOSPHORYLATION, TISSUE SPECIFICITY, INTERACTION WITH SHC1. Strain: DBA/2. |
| [2] | "The 145-kDa protein induced to associate with Shc by multiple cytokines is an inositol tetraphosphate and phosphatidylinositol 3,4,5-triphosphate 5-phosphatase." Damen J.E., Liu L., Rosten P., Humphries R.K., Jefferson A.B., Majerus P.W., Krystal G. Proc. Natl. Acad. Sci. U.S.A. 93:1689-1693(1996) [PubMed: 8643691] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), PROTEIN SEQUENCE OF 902-916, ENZYME ACTIVITY, TISSUE SPECIFICITY, INTERACTION WITH GRB2 AND SHC1. |
| [3] | "Molecular cloning and chromosomal localization in human and mouse of the SH2-containing inositol phosphatase, INPP5D (SHIP)." Liu Q., Dumont D.J. Genomics 39:109-112(1997) [PubMed: 9027494] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). |
| [4] | "A novel spliced form of SH2-containing inositol phosphatase is expressed during myeloid development." Lucas D.M., Rohrschneider L.R. Blood 93:1922-1933(1999) [PubMed: 10068665] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3), PHOSPHORYLATION, INTERACTION WITH SHC1 AND GRB2, TISSUE SPECIFICITY, DEVELOPMENTAL STAGE. Strain: BALB/c. |
| [5] | "Cloning of the genomic locus of mouse SH2 containing inositol 5-phosphatase (SHIP) and a novel 110-kDa splice isoform, SHIPdelta." Wolf I., Lucas D.M., Algate P.A., Rohrschneider L.R. Genomics 69:104-112(2000) [PubMed: 11013080] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORM 4). Strain: 129/Sv. |
| [6] | "Embryonic and hematopoietic stem cells express a novel SH2-containing inositol 5'-phosphatase isoform that partners with the Grb2 adapter protein." Tu Z., Ninos J.M., Ma Z., Wang J.-W., Lemos M.P., Desponts C., Ghansah T., Howson J.M., Kerr W.G. Blood 98:2028-2038(2001) [PubMed: 11567986] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 5). |
| [7] | "The transcriptional landscape of the mammalian genome." Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. |

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