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Reviewed, UniProtKB/Swiss-Prot Q9ES52 (SHIP1_MOUSE)

Last modified November 4, 2008. Version 54. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (4) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 1
    EC=3.1.3.n1
Alternative name(s):
    SH2 domain-containing inositol-5'-phosphatase 1
    SH2 domain-containing inositol phosphatase 1
      Short name=SHIP-1
    Inositol polyphosphate-5-phosphatase of 145 kDa
      Short name=SIP-145
    p150Ship
Gene names
Name: Inpp5d
Synonyms: 7a33, Ship, Ship1
OrganismMus musculus (Mouse)
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMus

Protein attributes

Sequence length1191 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

General annotation (Comments)

Function

Phosphatidylinositol (PtdIns) phosphatase that specifically hydrolyzes the 5-phosphate of phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) to produce PtdIns(3,4)P2, thereby negatively regulating the PI3K (phosphoinositide 3-kinase) pathways. Acts as a negative regulator of B-cell antigen receptor signaling. Mediates signaling from the FC-gamma-RIIB receptor (FCGR2B), playing a central role in terminating signal transduction from activating immune/hematopoietic cell receptor systems. Acts as a negative regulator of myeloid cell proliferation/survival and chemotaxis, mast cell degranulation, immune cells homeostasis, integrin alpha-IIb/beta-3 signaling in platelets and JNK signaling in B-cells. Regulates proliferation of osteoclast precursors, macrophage programming, phagocytosis and activation and is required for endotoxin tolerance. Involved in the control of cell-cell junctions, CD32a signaling in neutrophils and modulation of EGF-induced phospholipase C activity. Key regulator of neutrophil migration, by governing the formation of the leading edge and polarization required for chemotaxis. Modulates FCGR3/CD16-mediated cytotoxicity in NK cells. Mediates the activin/TGF-beta-induced apoptosis through its Smad-dependent expression. May also hydrolyze PtdIns(1,3,4,5)P4, and could thus affect the levels of the higher inositol polyphosphates like InsP6.

Catalytic activity

Phosphatidylinositol 3,4,5-trisphosphate + H(2)O = phosphatidylinositol 3,4-bisphosphate + phosphate.

Enzyme regulation

Activated upon translocation to the sites of synthesis of PtdIns(3,4,5)P3 in the membrane.

Subunit structure

Interacts with tyrosine phosphorylated forms of SHC1, DOK1, DOK3, PTPN11/SHP-2, SLAMF1/CD150. Interacts with PTPN11 in response to IL-3. Interacts with receptors EPOR, MS4A2/FCER1B and FCER1G, FCGR2A, FCGR2B and FCGR3. Interacts with GRB2 and PLCG1. Interacts with tyrosine kinases SRC and TEC. Interacts with FCGR2A, leading to regulate gene expression during the phagocytic process. Interacts with c-Met/MET. Isoform 5 interacts with IL6ST/gp130.

Subcellular location

Cytoplasm. Cell membrane; Peripheral membrane protein. Note= Translocates to the plasma membrane when activated, translocation is probably due to different mechanisms depending on the stimulus and cell type. Partly translocated via its SH2 domain which mediates interaction with tyrosine phosphorylated receptors such as the FC-gamma-RIIB receptor (FCGR2B) or CD16/FCGR3. Tyrosine phosphorylation may also participate to membrane localization.

Isoform 5: Cell membrane; Peripheral membrane protein. Note= Constitutively present at the cell membrane.

Tissue specificity

Specifically expressed in immune and hematopoietic cells. Levels vary considerably within this compartment. Lost during erythropoiesis when erythroid cells become Ter119+. Increases substantially with T-cell maturation and when resting B-cells are activated. Also present in mature granulocytes, monocyte/macrophages, mast cells and platelets. Isoform 5 is the only form expressed in embryonic stem (ES) cells and is co-expressed with other isoforms in hematopoietic stem cells, and disapears with differentiation.

Developmental stage

Expressed in late primitive-streak stage embryos (7.5 dpc), when hematopoiesis is thought to begin, and the expression is restricted to the hematopoietic lineage in embryo. In adults expression continues to be in the majority of cells from hematopoietic origin, including granulocytes, monocytes and lymphocytes, and is also found in the spermatids of the testis.

Induction

By activin/TGF-beta (at protein level). Regulated by the Smad pathway. Isoform 3 is expressed during myeloid development.

Domain

The SH2 domain interacts with tyrosine phosphorylated forms of proteins such as SHC1 or PTPN11/SHP-2. It competes with that of GRB2 for binding to phosphorylated SHC1 to inhibit the Ras pathway. It is also required for tyrosine phosphorylation.

The NPXY sequence motif found in many tyrosine-phosphorylated proteins is required for the specific binding of the PID domain.

Post-translational modification

Tyrosine phosphorylated by the members of the SRC family after exposure to a diverse array of extracellular stimuli such as cytokines, growth factors, antibodies, chemokines, integrin ligands and hypertonic and oxidative stress. Phosphorylated upon IgG receptor FCGR2B-binding.

Miscellaneous

Mice lacking Inpp5d are viable and fertile. They however fail to thrive and only 40% survive by 14 weeks of age. Mortality is associated with extensive consolidation of the lungs resulting from infiltration by myeloid cells. Increased numbers of granulocyte-macrophage progenitors are observed in both the bone marrow and spleen. Absence of Inpp5d leads to steel factor-induced degranulation of mast cells. They also display increased numbers of osteoclast precursors leading to a severe osteoporosis.

Sequence similarities

Belongs to the inositol-1,4,5-trisphosphate 5-phosphatase family.

Contains 1 SH2 domain.

Ontologies

Keywords

   Biological processApoptosis
Immune response
   Cellular componentCell membrane
Cytoplasm
Membrane
   Coding sequence diversityAlternative splicing
   DomainRepeat
SH2 domain
SH3-binding
   Molecular functionHydrolase
   PTMPhosphoprotein
   Technical termDirect protein sequencing

Gene Ontology (GO)

   Biological processdetermination of adult life span Ref.24

Inferred from mutant phenotype. Source: MGI

immunoglobulin mediated immune response

Inferred from mutant phenotype. Source: MGI

intracellular signaling cascade

Inferred from mutant phenotype. Source: MGI

negative regulation of B cell proliferation

Inferred from mutant phenotype. Source: MGI

negative regulation of bone resorption Ref.37

Inferred from mutant phenotype. Source: MGI

negative regulation of immune response

Inferred from mutant phenotype. Source: MGI

negative regulation of interleukin-6 biosynthetic process Ref.37

Inferred from mutant phenotype. Source: MGI

negative regulation of monocyte differentiation Ref.24

Inferred from mutant phenotype. Source: MGI

negative regulation of neutrophil differentiation Ref.24

Inferred from mutant phenotype. Source: MGI

negative regulation of osteoclast differentiation Ref.37

Inferred from mutant phenotype. Source: MGI

negative regulation of signal transduction Ref.24 Ref.37

Inferred from mutant phenotype. Source: MGI

positive regulation of B cell differentiation Ref.24

Inferred from mutant phenotype. Source: MGI

positive regulation of apoptosis Ref.37

Inferred from mutant phenotype. Source: MGI

positive regulation of erythrocyte differentiation Ref.24

Inferred from mutant phenotype. Source: MGI

   Molecular functionprotein binding Ref.4 Ref.31

Inferred from physical interaction. Source: UniProtKB

Complete GO annotation...

Alternative products

This entry describes 6 isoforms produced by alternative splicing. [Align] [Select]
Isoform 1 (identifier: Q9ES52-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 2 (identifier: Q9ES52-2)

The sequence of this isoform differs from the canonical sequence as follows:
     120-120: Missing.
Isoform 3 (identifier: Q9ES52-3)

Also known as: 135 kDa SHIP;

The sequence of this isoform differs from the canonical sequence as follows:
     920-980: Missing.
Isoform 4 (identifier: Q9ES52-4)

Also known as: SHIPdelta;

The sequence of this isoform differs from the canonical sequence as follows:
     120-120: Missing.
     920-960: GMGPFGQPLH...DSSLGPGRGE → VFIFHSQPRS...GPAADEARDV
     961-1191: Missing.
Isoform 5 (identifier: Q9ES52-5)

Also known as: s-SHIP;

The sequence of this isoform differs from the canonical sequence as follows:
     1-263: Missing.
Notes: Constitutively present at the cell membrane.
Isoform 6 (identifier: Q9ES52-6)

Also known as: s-SHIPD183;

The sequence of this isoform differs from the canonical sequence as follows:
     1-263: Missing.
     920-980: Missing.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 11911191Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 1
PRO_0000302867

Regions

Domain8 – 10497SH2
Motif127 – 1326SH3-binding 1
Motif915 – 9184NPXY motif 1
Motif970 – 9756SH3-binding 2
Motif1018 – 10214NPXY motif 2
Motif1039 – 105012SH3-binding 3
Compositional bias962 – 1153192Pro-rich

Amino acid modifications

Modified residue8681Phosphotyrosine
Modified residue9181Phosphotyrosine
Modified residue9351Phosphoserine
Modified residue9451Phosphotyrosine
Modified residue10211Phosphotyrosine

Natural variations

Alternative sequence1 – 263263Missing in isoform 5 and isoform 6.
VSP_027980
Alternative sequence1201Missing in isoform 2 and isoform 4.
VSP_027981
Alternative sequence920 – 98061Missing in isoform 3 and isoform 6.
VSP_027982
Alternative sequence920 – 96041GMGPF…PGRGE → VFIFHSQPRSLPQGARGKTW GSGKGGSSAPGGPAADEARD V in isoform 4.
VSP_027983
Alternative sequence961 – 1191231Missing in isoform 4.
VSP_027984

Experimental info

Mutagenesis6761D → G: Loss of function
Mutagenesis9181Y → F: Strongly impairs function, tyrosine phosphorylation, subcellular location and interaction with DOK1; when associated with F-1021
Mutagenesis10211Y → F: Strongly impairs function, tyrosine phosphorylation, subcellular location and interaction with DOK1; when associated with F-918
Sequence conflict431Y → C in AAB18937. Ref.2
Sequence conflict5271V → A in AAC53023. Ref.3
Sequence conflict5341N → I in AAC53023. Ref.3
Sequence conflict9051C → E AA sequence Ref.2
Sequence conflict9811A → T in AAB18937. Ref.2

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 [UniParc].

Last modified September 11, 2007. Version 2.
Checksum: AF9F21326A59EC7A

FASTA1,191133,542
        10         20         30         40         50         60 
MPAMVPGWNH GNITRSKAEE LLSRAGKDGS FLVRASESIP RAYALCVLFR NCVYTYRILP 

        70         80         90        100        110        120 
NEDDKFTVQA SEGVPMRFFT KLDQLIDFYK KENMGLVTHL QYPVPLEEED AIDEAEEDTV 

       130        140        150        160        170        180 
ESVMSPPELP PRNIPMSAGP SEAKDLPLAT ENPRAPEVTR LSLSETLFQR LQSMDTSGLP 

       190        200        210        220        230        240 
EEHLKAIQDY LSTQLLLDSD FLKTGSSNLP HLKKLMSLLC KELHGEVIRT LPSLESLQRL 

       250        260        270        280        290        300 
FDQQLSPGLR PRPQVPGEAS PITMVAKLSQ LTSLLSSIED KVKSLLHEGS ESTNRRSLIP 

       310        320        330        340        350        360 
PVTFEVKSES LGIPQKMHLK VDVESGKLIV KKSKDGSEDK FYSHKKILQL IKSQKFLNKL 

       370        380        390        400        410        420 
VILVETEKEK ILRKEYVFAD SKKREGFCQL LQQMKNKHSE QPEPDMITIF IGTWNMGNAP 

       430        440        450        460        470        480 
PPKKITSWFL SKGQGKTRDD SADYIPHDIY VIGTQEDPLG EKEWLELLRH SLQEVTSMTF 

       490        500        510        520        530        540 
KTVAIHTLWN IRIVVLAKPE HENRISHICT DNVKTGIANT LGNKGAVGVS FMFNGTSLGF 

       550        560        570        580        590        600 
VNSHLTSGSE KKLRRNQNYM NILRFLALGD KKLSPFNITH RFTHLFWLGD LNYRVELPTW 

       610        620        630        640        650        660 
EAEAIIQKIK QQQYSDLLAH DQLLLERKDQ KVFLHFEEEE ITFAPTYRFE RLTRDKYAYT 

       670        680        690        700        710        720 
KQKATGMKYN LPSWCDRVLW KSYPLVHVVC QSYGSTSDIM TSDHSPVFAT FEAGVTSQFV 

       730        740        750        760        770        780 
SKNGPGTVDS QGQIEFLACY ATLKTKSQTK FYLEFHSSCL ESFVKSQEGE NEEGSEGELV 

       790        800        810        820        830        840 
VRFGETLPKL KPIISDPEYL LDQHILISIK SSDSDESYGE GCIALRLETT EAQHPIYTPL 

       850        860        870        880        890        900 
THHGEMTGHF RGEIKLQTSQ GKMREKLYDF VKTERDESSG MKCLKNLTSH DPMRQWEPSG 

       910        920        930        940        950        960 
RVPACGVSSL NEMINPNYIG MGPFGQPLHG KSTLSPDQQL TAWSYDQLPK DSSLGPGRGE 

       970        980        990       1000       1010       1020 
GPPTPPSQPP LSPKKFSSST ANRGPCPRVQ EARPGDLGKV EALLQEDLLL TKPEMFENPL 

      1030       1040       1050       1060       1070       1080 
YGSVSSFPKL VPRKEQESPK MLRKEPPPCP DPGISSPSIV LPKAQEVESV KGTSKQAPVP 

      1090       1100       1110       1120       1130       1140 
VLGPTPRIRS FTCSSSAEGR MTSGDKSQGK PKASASSQAP VPVKRPVKPS RSEMSQQTTP 

      1150       1160       1170       1180       1190 
IPAPRPPLPV KSPAVLQLQH SKGRDYRDNT ELPHHGKHRQ EEGLLGRTAM Q 

« Hide

Isoform 2 [UniParc].

Checksum: DF81F3046F33A07F
Show »

1,190133,443
Isoform 3 (135 kDa SHIP) [UniParc].

Checksum: C3E2F1EB206034BF
Show »

1,130127,199
Isoform 4 (SHIPdelta) [UniParc].

Checksum: B95D49476957345E
Show »

959108,345
Isoform 5 (s-SHIP) [UniParc].

Checksum: 7390D08E57505B82
Show »

928104,101
Isoform 6 (s-SHIPD183) [UniParc].

Checksum: F848515DE853AD65
Show »

86797,758

References

« Hide 'large scale' references
[1]"p150Ship, a signal transduction molecule with inositol polyphosphate-5-phosphatase activity."
Lioubin M.N., Algate P.A., Tsai S., Carlberg K., Aebersold A., Rohrschneider L.R.
Genes Dev. 10:1084-1095(1996) [PubMed: 8654924] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), PROTEIN SEQUENCE OF 2-9 AND 1163-1173, FUNCTION, ENZYME ACTIVITY, PHOSPHORYLATION, TISSUE SPECIFICITY, INTERACTION WITH SHC1.
Strain: DBA/2.
[2]"The 145-kDa protein induced to associate with Shc by multiple cytokines is an inositol tetraphosphate and phosphatidylinositol 3,4,5-triphosphate 5-phosphatase."
Damen J.E., Liu L., Rosten P., Humphries R.K., Jefferson A.B., Majerus P.W., Krystal G.
Proc. Natl. Acad. Sci. U.S.A. 93:1689-1693(1996) [PubMed: 8643691] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), PROTEIN SEQUENCE OF 902-916, ENZYME ACTIVITY, TISSUE SPECIFICITY, INTERACTION WITH GRB2 AND SHC1.
[3]"Molecular cloning and chromosomal localization in human and mouse of the SH2-containing inositol phosphatase, INPP5D (SHIP)."
Liu Q., Dumont D.J.
Genomics 39:109-112(1997) [PubMed: 9027494] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
[4]"A novel spliced form of SH2-containing inositol phosphatase is expressed during myeloid development."
Lucas D.M., Rohrschneider L.R.
Blood 93:1922-1933(1999) [PubMed: 10068665] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3), PHOSPHORYLATION, INTERACTION WITH SHC1 AND GRB2, TISSUE SPECIFICITY, DEVELOPMENTAL STAGE.
Strain: BALB/c.
[5]"Cloning of the genomic locus of mouse SH2 containing inositol 5-phosphatase (SHIP) and a novel 110-kDa splice isoform, SHIPdelta."
Wolf I., Lucas D.M., Algate P.A., Rohrschneider L.R.
Genomics 69:104-112(2000) [PubMed: 11013080] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORM 4).
Strain: 129/Sv.
[6]"Embryonic and hematopoietic stem cells express a novel SH2-containing inositol 5'-phosphatase isoform that partners with the Grb2 adapter protein."
Tu Z., Ninos J.M., Ma Z., Wang J.-W., Lemos M.P., Desponts C., Ghansah T., Howson J.M., Kerr W.G.
Blood 98:2028-2038(2001) [PubMed: 11567986] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 5).
[7]"The transcriptional landscape of the mammalian genome."
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. expand/collapse author list , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z.,