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Protein
Submitted name:

Histone demethylase SWIRM1

Gene

SOCG_03518

Organism
Schizosaccharomyces octosporus (strain yFS286) (Fission yeast) (Octosporomyces octosporus)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi849 – 929HMG boxPROSITE-ProRule annotationAdd BLAST81

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation, MethyltransferaseImported, Transferase

Names & Taxonomyi

Protein namesi
Submitted name:
Histone demethylase SWIRM1Imported
Gene namesi
ORF Names:SOCG_03518Imported
OrganismiSchizosaccharomyces octosporus (strain yFS286) (Fission yeast) (Octosporomyces octosporus)Imported
Taxonomic identifieri483514 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000016088 Componenti: Unassembled WGS sequence

Organism-specific databases

EuPathDBiFungiDB:SOCG_03518.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini168 – 264SWIRMInterPro annotationAdd BLAST97
Domaini849 – 929HMG boxInterPro annotationAdd BLAST81

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili819 – 843Sequence analysisAdd BLAST25
Coiled coili911 – 945Sequence analysisAdd BLAST35

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

OrthoDBiEOG092C0OC4.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.10.30.10. 1 hit.
3.50.50.60. 1 hit.
InterProiView protein in InterPro
IPR002937. Amino_oxidase.
IPR036188. FAD/NAD-bd_sf.
IPR009071. HMG_box_dom.
IPR036910. HMG_box_dom_sf.
IPR009057. Homeobox-like_sf.
IPR007526. SWIRM.
IPR036388. WH-like_DNA-bd_sf.
PfamiView protein in Pfam
PF01593. Amino_oxidase. 1 hit.
PF04433. SWIRM. 1 hit.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF47095. SSF47095. 1 hit.
SSF51905. SSF51905. 2 hits.
PROSITEiView protein in PROSITE
PS50118. HMG_BOX_2. 1 hit.
PS50934. SWIRM. 1 hit.

Sequencei

Sequence statusi: Complete.

S9Q3R7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMELSPKDDI TNVLNNGSPQ SADPSLWAIF GQNSMEDSNE RRNIGSEADN
60 70 80 90 100
GIFDLSQLNE HQLASSVPNP IGLSGHDGLI AKNFEEADTS GKQEASMLNQ
110 120 130 140 150
HMLNTEAAQK GLDAKGRQSV NGIRKGKRVS ATANSLERNG TQFVSNEAPI
160 170 180 190 200
AVKSSIPALP RTTYERLCYE SAIASGLSPN SLSDEEVELL SEILDNPNWL
210 220 230 240 250
SLYLKIRNGI CYLWHRNPTL FVSFNEALGI VRDKMAFPLA SLAFEFLTRN
260 270 280 290 300
GYINYGSLNI SQNVQPGETL PRKTIAVVGA GMAGVSCARQ LANLFAQYEQ
310 320 330 340 350
DFTTRGEQPP QLIVYEASSR LGGHVFSHEI SLIESLSEEE QVGLQMDIPQ
360 370 380 390 400
ACTVNLSSDF LYGFPFLEND PLHIIVSQQL SLDEVLRQTQ NVALYDSDAC
410 420 430 440 450
RIDQRYIDRI LMLFRSLLDY FFSMKNDQLL NIVSSPKQKF IGALQSLDWH
460 470 480 490 500
LVGDIFPLST QDSLKIFLED SFRNLNHSLH FSIPETRVFE WCVEYLKQTS
510 520 530 540 550
YAPLESIKPT SFNSINFPFG EDVPSYAIKN GMSTLIEALA TTPSPLPILF
560 570 580 590 600
DHTIQSVDVD DQKVQLSFTN EESVTVDKVV MCLPIDKYRN STVSFRPAIS
610 620 630 640 650
ENKINALNKC YMLNRKKIVF LFNKQFWELN RSIFGSLTSS KKNYIFNDCS
660 670 680 690 700
DIYGLPSLSV YVDIPAHQQV VDRDIVHDIL AELRSIFKVE NLQPLRTVIT
710 720 730 740 750
NWENNAFLNH SSYTISPDSS LEDYSILRES MGDTVYFASE ALSKDHPGTL
760 770 780 790 800
RGAFQSGLLA AKDILSSLIG DVAVPSTLIV EEKLEGSESS RKRSAGQTYD
810 820 830 840 850
TRRKDNDDDK ALSYYHDYLR LRKQRLEKEE QECELLIAEL LGTRPTAPAR
860 870 880 890 900
PSANPYLIYQ KTQWHVCRAL ADQEKQRSTG DPEVRATKNE IRAKLGKTWR
910 920 930 940 950
ALDDLGKQPW VDEVTARRAN YSSRLEEYQR QINGYNVRAA QIRDEHLRKC
960 970 980 990 1000
ESQPLPEEEA RLKILSQEED ERAQKRRLLE NTALNDSDEE YRDDMDYEEQ
1010
FDDNFSDTFT
Length:1,010
Mass (Da):114,307
Last modified:October 16, 2013 - v1
Checksum:i48603BAD2AD3D9F9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KE503206 Genomic DNA. Translation: EPX74308.1.
RefSeqiXP_013017460.1. XM_013162006.1.

Genome annotation databases

EnsemblFungiiEPX74308; EPX74308; SOCG_03518.
GeneIDi25032490.

Similar proteinsi

Entry informationi

Entry nameiS9Q3R7_SCHOY
AccessioniPrimary (citable) accession number: S9Q3R7
Entry historyiIntegrated into UniProtKB/TrEMBL: October 16, 2013
Last sequence update: October 16, 2013
Last modified: November 22, 2017
This is version 27 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported