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Protein
Submitted name:

Ribulose bisphosphate carboxylase, large subunit

Gene

cbbM

Organism
Sulfuricella denitrificans skB26
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. magnesium ion binding Source: InterPro
  2. ribulose-bisphosphate carboxylase activity Source: UniProtKB-EC

GO - Biological processi

  1. carbon fixation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
Ribulose bisphosphate carboxylase, large subunitImported (EC:4.1.1.39Imported)
Gene namesi
Name:cbbMImported
ORF Names:SCD_n02850Imported
OrganismiSulfuricella denitrificans skB26Imported
Taxonomic identifieri1163617 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaSulfuricellalesSulfuricellaceaeSulfuricella
ProteomesiUP000015559 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01601.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPiMF_01339. RuBisCO_L_type2.
InterProiIPR020871. RuBisCO.
IPR020878. RuBisCo_large_chain_AS.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

S6AP25-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDQSNRYADL SLKEEDLIKG DNHILVAYHM QPATGYGYLE VAAHIAAESS
60 70 80 90 100
TGTNVEVSTT DDFTKGVDAL VYFIDEAKGI MKVAYPNDLF DRNVTDGRAM
110 120 130 140 150
LVSFLTLAIG NNQGMGDVKH LQMQDFYVPW SMLRLYDGPA KDITDLWDIL
160 170 180 190 200
GRPRINGGYI AGTIIKPKLG LRPEPFAKAA YQFWLGGDFI KNDEPQGNQV
210 220 230 240 250
FCPTKKVIPL VYDSMKRAMD ETGQAKLFSA NITADDHYEM LARADYILET
260 270 280 290 300
FGPDANKVAF LVDGYVGGPG MITTARRQYP GQYLHYHRAG HGAITSPSAV
310 320 330 340 350
RGYTAFVLSK MSRLQGASGI HVGTMGYGKM EGGKDDRNIA YMIERDSADG
360 370 380 390 400
PYYHQEWHGM KPTTPIISGG MNALRLPGFF ENLGHGNVIN TSGGGSYGHI
410 420 430 440 450
DSPAAGAISL RQSYECWKAG ADPIEFAKEH KEFARAFESF PGDADKIFPG

WREKLGVHK
Length:459
Mass (Da):50,557
Last modified:October 15, 2013 - v1
Checksum:i4A820FEB687B8F86
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP013066 Genomic DNA. Translation: BAN36649.1.
RefSeqiWP_009207390.1. NC_022357.1.
YP_008547681.1. NC_022357.1.

Genome annotation databases

EnsemblBacteriaiBAN36649; BAN36649; SCD_n02850.
KEGGisdr:SCD_n02850.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP013066 Genomic DNA. Translation: BAN36649.1.
RefSeqiWP_009207390.1. NC_022357.1.
YP_008547681.1. NC_022357.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAN36649; BAN36649; SCD_n02850.
KEGGisdr:SCD_n02850.

Phylogenomic databases

KOiK01601.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPiMF_01339. RuBisCO_L_type2.
InterProiIPR020871. RuBisCO.
IPR020878. RuBisCo_large_chain_AS.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Draft genome sequence of a psychrotolerant sulfur-oxidizing bacterium, Sulfuricella denitrificans skB26, and proteomic insights into cold adaptation."
    Watanabe T., Kojima H., Fukui M.
    Appl. Environ. Microbiol. 78:6545-6549(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SkB26Imported.

Entry informationi

Entry nameiS6AP25_9PROT
AccessioniPrimary (citable) accession number: S6AP25
Entry historyi
Integrated into UniProtKB/TrEMBL: October 15, 2013
Last sequence update: October 15, 2013
Last modified: March 31, 2015
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.