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S5PPR4 (S5PPR4_PASHA) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 6. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:malS EMBL AGR75765.1
ORF Names:N220_10795 EMBL AGR75765.1
OrganismMannheimia haemolytica USMARC_2286 [Complete proteome] EMBL AGR75765.1
Taxonomic identifier1366053 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPasteurellalesPasteurellaceaeMannheimia

Protein attributes

Sequence length685 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
S5PPR4 [UniParc].

Last modified October 16, 2013. Version 1.
Checksum: A9AF20BBD5446D11

FASTA68578,841
        10         20         30         40         50         60 
MKNALPYLCL FYTSSLFAQS WQHSHFSDFN DDLEKHFFQS QVQLEKGSYP LRFKFGEQCY 

        70         80         90        100        110        120 
QPQQAIKLNQ SVALVPCINE APQLRLFRQG NYLAQIDLRS GTPTPTISVE QQLQHNEAMF 

       130        140        150        160        170        180 
QSCPNWDKKP IEIDVSSTFA EGESVSDFYS GNTAIVKNGK VTLMPNENAS GLILLEKSNT 

       190        200        210        220        230        240 
ENTATFDWKN ATVYFVLTDR FYNGDPTNDH SYHRQKDGMQ EIGTFHGGDL KGLTEKLDYL 

       250        260        270        280        290        300 
QQLGVNVLWI SSPLEQMHGW VGGGDKGDFP HYGYHGYYHL DWTKLDANMG TEDDLSRFVQ 

       310        320        330        340        350        360 
QAHQRGIRVL FDVVMNHTGY ATLADMQEFN FGGFYLTPDE ISRTLGEKWT HWKPKSGQNW 

       370        380        390        400        410        420 
HSFNDFIRFN DNQAWQNWWG KEWVRADIAD YDSPKFDDLK MSLAALPDLK TESEQAVKLP 

       430        440        450        460        470        480 
EFFANKNTNA KTLPNAKVRD YLIGWLSDWV RKYGIDGFRV DTAKHVEKST WLVLKQSAQQ 

       490        500        510        520        530        540 
ALNEWQKANP NAGFNDRFWM TGEAWGHGVF KSDYYQNGFD AMINFDFQDQ AKQGLNCFAH 

       550        560        570        580        590        600 
IEPIYAEMNR KLSDFNVLSY LSSHDTRLFF HSDSEQNIEK HKTAANLLLL SPGAVQIYYG 

       610        620        630        640        650        660 
DESGRTFGAT GSDLIQGTRS DMNWQELQQD PQKQALHQHW QKLTQFRQRH PAIGAGVHQL 

       670        680 
IKNDSYFAFK RVLNEDKVMV VWAGN 

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References

[1]"Reducing assembly complexity of microbial genomes with single-molecule sequencing."
Koren S., Harhay G.P., Smith T.P.L., Bono J.L., Harhay D.M., McVey S., Radune D., Bergman N.H., Phillippy A.M.
Submitted (JUL-2013) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: USMARC_2286 EMBL AGR75765.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP006619 Genomic DNA. Translation: AGR75765.1.
RefSeqYP_008339586.1. NC_021883.1.

3D structure databases

ProteinModelPortalS5PPR4.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAGR75765; AGR75765; N220_10795.
GeneID16910810.
KEGGmhal:N220_10795.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01176.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 2 hits.
ProtoNetSearch...

Entry information

Entry nameS5PPR4_PASHA
AccessionPrimary (citable) accession number: S5PPR4
Entry history
Integrated into UniProtKB/TrEMBL: October 16, 2013
Last sequence update: October 16, 2013
Last modified: June 11, 2014
This is version 6 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)