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S5PPR4

- S5PPR4_PASHA

UniProt

S5PPR4 - S5PPR4_PASHA

Protein
Submitted name:

Alpha-amylase

Gene

malS

Organism
Mannheimia haemolytica USMARC_2286
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 8 (01 Oct 2014)
      Sequence version 1 (16 Oct 2013)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. alpha-amylase activity Source: InterPro
    2. calcium ion binding Source: InterPro

    GO - Biological processi

    1. alpha-glucan catabolic process Source: InterPro
    2. cellular oligosaccharide catabolic process Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Alpha-amylaseImported
    Gene namesi
    Name:malSImported
    ORF Names:N220_10795Imported
    OrganismiMannheimia haemolytica USMARC_2286Imported
    Taxonomic identifieri1366053 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPasteurellalesPasteurellaceaeMannheimia
    ProteomesiUP000015084: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. periplasmic space Source: InterPro

    Structurei

    3D structure databases

    ProteinModelPortaliS5PPR4.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01176.

    Family and domain databases

    Gene3Di3.20.20.80. 1 hit.
    InterProiIPR014635. A_amylase_MalS.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    [Graphical view]
    PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
    SMARTiSM00642. Aamy. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 2 hits.

    Sequencei

    Sequence statusi: Complete.

    S5PPR4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKNALPYLCL FYTSSLFAQS WQHSHFSDFN DDLEKHFFQS QVQLEKGSYP    50
    LRFKFGEQCY QPQQAIKLNQ SVALVPCINE APQLRLFRQG NYLAQIDLRS 100
    GTPTPTISVE QQLQHNEAMF QSCPNWDKKP IEIDVSSTFA EGESVSDFYS 150
    GNTAIVKNGK VTLMPNENAS GLILLEKSNT ENTATFDWKN ATVYFVLTDR 200
    FYNGDPTNDH SYHRQKDGMQ EIGTFHGGDL KGLTEKLDYL QQLGVNVLWI 250
    SSPLEQMHGW VGGGDKGDFP HYGYHGYYHL DWTKLDANMG TEDDLSRFVQ 300
    QAHQRGIRVL FDVVMNHTGY ATLADMQEFN FGGFYLTPDE ISRTLGEKWT 350
    HWKPKSGQNW HSFNDFIRFN DNQAWQNWWG KEWVRADIAD YDSPKFDDLK 400
    MSLAALPDLK TESEQAVKLP EFFANKNTNA KTLPNAKVRD YLIGWLSDWV 450
    RKYGIDGFRV DTAKHVEKST WLVLKQSAQQ ALNEWQKANP NAGFNDRFWM 500
    TGEAWGHGVF KSDYYQNGFD AMINFDFQDQ AKQGLNCFAH IEPIYAEMNR 550
    KLSDFNVLSY LSSHDTRLFF HSDSEQNIEK HKTAANLLLL SPGAVQIYYG 600
    DESGRTFGAT GSDLIQGTRS DMNWQELQQD PQKQALHQHW QKLTQFRQRH 650
    PAIGAGVHQL IKNDSYFAFK RVLNEDKVMV VWAGN 685
    Length:685
    Mass (Da):78,841
    Last modified:October 16, 2013 - v1
    Checksum:iA9AF20BBD5446D11
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP006619 Genomic DNA. Translation: AGR75765.1.
    RefSeqiWP_006248006.1. NC_021883.1.
    YP_008339586.1. NC_021883.1.

    Genome annotation databases

    EnsemblBacteriaiAGR75765; AGR75765; N220_10795.
    GeneIDi16910810.
    KEGGimhal:N220_10795.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP006619 Genomic DNA. Translation: AGR75765.1 .
    RefSeqi WP_006248006.1. NC_021883.1.
    YP_008339586.1. NC_021883.1.

    3D structure databases

    ProteinModelPortali S5PPR4.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AGR75765 ; AGR75765 ; N220_10795 .
    GeneIDi 16910810.
    KEGGi mhal:N220_10795.

    Phylogenomic databases

    KOi K01176.

    Family and domain databases

    Gene3Di 3.20.20.80. 1 hit.
    InterProi IPR014635. A_amylase_MalS.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF036917. Alph_amls_MalS. 1 hit.
    SMARTi SM00642. Aamy. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 2 hits.
    ProtoNeti Search...

    Publicationsi

    1. "Reducing assembly complexity of microbial genomes with single-molecule sequencing."
      Koren S., Harhay G.P., Smith T.P.L., Bono J.L., Harhay D.M., McVey S., Radune D., Bergman N.H., Phillippy A.M.
      Submitted (JUL-2013) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: USMARC_2286Imported.

    Entry informationi

    Entry nameiS5PPR4_PASHA
    AccessioniPrimary (citable) accession number: S5PPR4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 16, 2013
    Last sequence update: October 16, 2013
    Last modified: October 1, 2014
    This is version 8 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3