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S5JRG4 (S5JRG4_VIBPH) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 6. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length694 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
S5JRG4 [UniParc].

Last modified October 16, 2013. Version 1.
Checksum: 49EFD3E1F1F97E16

FASTA69478,863
        10         20         30         40         50         60 
MKKTILALSI GLLSACSQIP ENAIVLSVGD DTAVFEPNSD GLLVAEQKLE KGNYTFTIAD 

        70         80         90        100        110        120 
SKQTCGNSFA LAEESRIKFN TPLKMDNCAT DTSMPLRIFK ANTYLFTLNP DTNELTVKIK 

       130        140        150        160        170        180 
PKQSQDITYS CPVATDTAKT INVVQTFTDG TVVRDALTGQ EATVANGSVT MQPGPISQGL 

       190        200        210        220        230        240 
LLLEEVDQQA EKPFSWDNAT VYFVMTDRFY NGNPDNDNSY GRNKDGKYEI GTFHGGDLAG 

       250        260        270        280        290        300 
LTKKLDYIES LGVNAIWITS PLEQIHGWVG GGDKGDFKHY GYHGYYHQDW TKLDANMGTE 

       310        320        330        340        350        360 
DELRTFIDTA HKKGIRVIWD VVMNHTGYAT LADMQEFGFG QLYLDDQEAK EVLGEKWTDW 

       370        380        390        400        410        420 
QPKSGQSWHS FNDYIKYGDS EAWEKWWGKD WIRTDIGDYD APGYNDITMS LNYLPDLKTE 

       430        440        450        460        470        480 
STQKTGLPNF FRNKDTNAQD ELKTPREHLI TWLSDWVRDY GIDGFRVDTA KHVEMEAWAE 

       490        500        510        520        530        540 
LKARTTQALA EWKQNHPDKA LDDLPFWMTG EVWAHSVVKS PYFDNGFDSI INFEFQSDVA 

       550        560        570        580        590        600 
PKALKCFAQL DNDYRRYAER INSDPEFNVL SYLSSHDTQL FWSARSRSFD DQARAANALM 

       610        620        630        640        650        660 
LAPGAVQIYY GDEIARDFGV TGSDPTQGTR SDMPWDKIHG EREDLLQHWQ KLGEFRQRHP 

       670        680        690 
AVAQGKHITR NQEGYYAFER QYQDDKVLIV YTGE 

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References

[1]"100K Food-borne pathogen sequencing project."
100K Food-borne pathogen sequencing consortium
Jones J., Zhao S., Xie Y., Thao K., Dao N., Clark T.A., Boitano M., Korlach J., Weimer B.
Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: CDC_K4557 EMBL AGQ99566.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP006008 Genomic DNA. Translation: AGQ99566.1.
RefSeqYP_008317642.1. NC_021848.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAGQ99566; AGQ99566; M636_21750.
GeneID16893833.
KEGGvpk:M636_21750.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01176.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameS5JRG4_VIBPH
AccessionPrimary (citable) accession number: S5JRG4
Entry history
Integrated into UniProtKB/TrEMBL: October 16, 2013
Last sequence update: October 16, 2013
Last modified: June 11, 2014
This is version 6 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)