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Protein

Phosphoenolpyruvate carboxylase

Gene

ppc

Organism
Vibrio parahaemolyticus O1:K33 str. CDC_K4557
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.UniRule annotationSAAS annotation

Catalytic activityi

Phosphate + oxaloacetate = H2O + phosphoenolpyruvate + HCO3-.UniRule annotationSAAS annotation

Cofactori

Mg2+UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei138 – 1381UniRule annotation
Active sitei544 – 5441UniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. phosphoenolpyruvate carboxylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. carbon fixation Source: UniProtKB-HAMAP
  2. oxaloacetate metabolic process Source: UniProtKB-HAMAP
  3. tricarboxylic acid cycle Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationSAAS annotation

Keywords - Biological processi

Carbon dioxide fixationUniRule annotationSAAS annotation

Keywords - Ligandi

MagnesiumUniRule annotationSAAS annotation, PyruvateImported

Names & Taxonomyi

Protein namesi
Recommended name:
Phosphoenolpyruvate carboxylaseUniRule annotationSAAS annotation (EC:4.1.1.31UniRule annotationSAAS annotation)
Short name:
PEPCUniRule annotation
Short name:
PEPCaseUniRule annotation
Gene namesi
Name:ppcUniRule annotation
ORF Names:M636_23660Imported
OrganismiVibrio parahaemolyticus O1:K33 str. CDC_K4557Imported
Taxonomic identifieri1338032 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000014945: Chromosome I

Interactioni

Subunit structurei

Homotetramer.UniRule annotation

Family & Domainsi

Sequence similaritiesi

Belongs to the PEPCase type 1 family.UniRule annotation

Phylogenomic databases

KOiK01595.

Family and domain databases

HAMAPiMF_00595. PEPcase_type1.
InterProiIPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamiPF00311. PEPcase. 1 hit.
[Graphical view]
PRINTSiPR00150. PEPCARBXLASE.
SUPFAMiSSF51621. SSF51621. 1 hit.
PROSITEiPS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

S5JBK0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MNEKYAALKS NVRMLGHLLG NTIRDAHGEE IFEKVETIRK LSKSAQAGNQ
60 70 80 90 100
ADRESLIEEI KHLPDEQLTP VTRAFNQFLN LTNIAEQYHT ISRHCEEHIC
110 120 130 140 150
EPDAINSLFS KLVQNDVSKL DTAQAVRDLN IELVLTAHPT EITRRTMINK
160 170 180 190 200
LVKINECLSK LELSDLSSKE RKKTERRLEQ LIAQSWHSDV IRQQRPTPLD
210 220 230 240 250
EAKWGFAVVE NSLWEAVPDF LREMNDRLKS YLGEGLPIDA RPVHFSSWMG
260 270 280 290 300
GDRDGNPFVT HSVTREVLLL SRWKAADLYL NDINELISEL SMTVSNDQVR
310 320 330 340 350
ELAGEDQHEP YRAILKQLRA LLNETKDILD AKIHGQKLAV KAPLQKVEQL
360 370 380 390 400
WDPLYACYQS LHECGMGVIA DGSLLDTLRR VKAFGVHLVR LDIRQESTRH
410 420 430 440 450
ADVLSELTRY LGIGDYEQWS EQDKIAFLTN ELASKRPLLP RDWEPSEPVK
460 470 480 490 500
EVLDTCKIIA LQPREAFGAY VISMARTASD VLAVHLLLQE AGCPYRMDVC
510 520 530 540 550
PLFETLDDLN NAESVIKQLM SIDLYRGFIQ NHQMVMIGYS DSAKDAGVMS
560 570 580 590 600
AGWAQYHAME SLVKVAEDEG VELTLFHGRG GTVGRGGAPA HAALLSQPPK
610 620 630 640 650
SLKGGLRVTE QGEMIRFKLG LPDVAVNSFN LYASAILEAN LLPPPEPKQE
660 670 680 690 700
WRDLMEVLSE VSCEAYRGIV RGEPDFVPYF RQATPELELG KLPLGSRPAK
710 720 730 740 750
RNPNGGVESL RAIPWIFSWS QNRLVLPAWL GAGEAIQYSV DKGHQALLEE
760 770 780 790 800
MCREWPFFST RLGMLEMVYT KCNMEISRYY DQRLVEPQLQ PLGDRLREQL
810 820 830 840 850
QRDIKSVLNV ENNENLMQSD PWGQESIRLR NIYVEPLNML QAELLYRTRQ
860 870
TEEASANLEE ALMVTIAGIA AGMRNTG
Length:877
Mass (Da):99,287
Last modified:October 16, 2013 - v1
Checksum:i63058B5A132D62C3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP006008 Genomic DNA. Translation: AGQ99847.1.
RefSeqiYP_008317974.1. NC_021848.1.

Genome annotation databases

EnsemblBacteriaiAGQ99847; AGQ99847; M636_23660.
GeneIDi16894215.
KEGGivpk:M636_23660.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP006008 Genomic DNA. Translation: AGQ99847.1.
RefSeqiYP_008317974.1. NC_021848.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAGQ99847; AGQ99847; M636_23660.
GeneIDi16894215.
KEGGivpk:M636_23660.

Phylogenomic databases

KOiK01595.

Family and domain databases

HAMAPiMF_00595. PEPcase_type1.
InterProiIPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamiPF00311. PEPcase. 1 hit.
[Graphical view]
PRINTSiPR00150. PEPCARBXLASE.
SUPFAMiSSF51621. SSF51621. 1 hit.
PROSITEiPS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "100K Food-borne pathogen sequencing project."
    100K Food-borne pathogen sequencing consortium
    Jones J., Zhao S., Xie Y., Thao K., Dao N., Clark T.A., Boitano M., Korlach J., Weimer B.
    Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: CDC_K4557Imported.

Entry informationi

Entry nameiS5JBK0_VIBPH
AccessioniPrimary (citable) accession number: S5JBK0
Entry historyi
Integrated into UniProtKB/TrEMBL: October 16, 2013
Last sequence update: October 16, 2013
Last modified: February 4, 2015
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.