Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

S5J706

- S5J706_VIBPH

UniProt

S5J706 - S5J706_VIBPH

Protein

Alpha-amylase

Gene

M636_01530

Organism
Vibrio parahaemolyticus O1:K33 str. CDC_K4557
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 8 (01 Oct 2014)
      Sequence version 1 (16 Oct 2013)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Catalytic activityi

    Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

    GO - Molecular functioni

    1. alpha-amylase activity Source: UniProtKB-EC
    2. cation binding Source: InterPro

    GO - Biological processi

    1. carbohydrate metabolic process Source: UniProtKB-KW

    Keywords - Molecular functioni

    GlycosidaseUniRule annotation, Hydrolase

    Keywords - Biological processi

    Carbohydrate metabolismUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
    Gene namesi
    ORF Names:M636_01530Imported
    OrganismiVibrio parahaemolyticus O1:K33 str. CDC_K4557Imported
    Taxonomic identifieri1338032 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
    ProteomesiUP000014945: Chromosome II

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 13 family.UniRule annotation

    Phylogenomic databases

    KOiK01176.

    Family and domain databases

    Gene3Di3.20.20.80. 1 hit.
    InterProiIPR006046. Alpha_amylase.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    [Graphical view]
    PRINTSiPR00110. ALPHAAMYLASE.
    SUPFAMiSSF51445. SSF51445. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    S5J706-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSGLQETQSA GANVILHAFD WKYADIAQRA NEIHQLGYGS VLVSPPMKSA    50
    HDERWWQRYQ PQDYRVIDNA LGDTQDFIYM VRELERVGVL VYADVVFNHM 100
    ANEAHLRRDL QYPRQDVLDQ YRQDEHKYQS LKLFGDLSKP LFSEEDFVEA 150
    FGIKDWKDKW QVQNGRITGG PTDPGLPTLR VCEHVVEQQR AYLKALKAIG 200
    VKGFRIDAAK HMTLEHLKRV WTDDITQDVH IFGEIITDGG ATEEEYQLFL 250
    EPYLQETRLG AYDFPLFSTI FKAFSKKGSF KSLIDPYCFG QALSNGRAIT 300
    FVVTHDIPNN DVFLDLIMDE EDEWIAYAYI LGRDGGVPLV YTDLDTSGIK 350
    NKNGKPRWKD AWNDPRMAKM IAFHNVTHGE SMTVLEGNDD MLVLKRGEKG 400
    IVVLNKSTRA QSLSLKTECD WFDLMSDQSV KAGIELKVPA KSFMLLVQK 449
    Length:449
    Mass (Da):51,400
    Last modified:October 16, 2013 - v1
    Checksum:i0D825B5EAB4F8E4A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP006007 Genomic DNA. Translation: AGQ96120.1.
    RefSeqiYP_008269559.1. NC_021822.1.

    Genome annotation databases

    EnsemblBacteriaiAGQ96120; AGQ96120; M636_01530.
    GeneIDi16889519.
    KEGGivpk:M636_01530.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP006007 Genomic DNA. Translation: AGQ96120.1 .
    RefSeqi YP_008269559.1. NC_021822.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AGQ96120 ; AGQ96120 ; M636_01530 .
    GeneIDi 16889519.
    KEGGi vpk:M636_01530.

    Phylogenomic databases

    KOi K01176.

    Family and domain databases

    Gene3Di 3.20.20.80. 1 hit.
    InterProi IPR006046. Alpha_amylase.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    [Graphical view ]
    PRINTSi PR00110. ALPHAAMYLASE.
    SUPFAMi SSF51445. SSF51445. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "100K Food-borne pathogen sequencing project."
      100K Food-borne pathogen sequencing consortium
      Jones J., Zhao S., Xie Y., Thao K., Dao N., Clark T.A., Boitano M., Korlach J., Weimer B.
      Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: CDC_K4557Imported.

    Entry informationi

    Entry nameiS5J706_VIBPH
    AccessioniPrimary (citable) accession number: S5J706
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 16, 2013
    Last sequence update: October 16, 2013
    Last modified: October 1, 2014
    This is version 8 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3