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S5J706 (S5J706_VIBPH) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 7. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length449 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units. RuleBase RU361134

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. RuleBase RU003615

Ontologies

Keywords
   Biological processCarbohydrate metabolism RuleBase RU361134
   Molecular functionGlycosidase RuleBase RU361134
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncatalytic activity

Inferred from electronic annotation. Source: InterPro

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
S5J706 [UniParc].

Last modified October 16, 2013. Version 1.
Checksum: 0D825B5EAB4F8E4A

FASTA44951,400
        10         20         30         40         50         60 
MSGLQETQSA GANVILHAFD WKYADIAQRA NEIHQLGYGS VLVSPPMKSA HDERWWQRYQ 

        70         80         90        100        110        120 
PQDYRVIDNA LGDTQDFIYM VRELERVGVL VYADVVFNHM ANEAHLRRDL QYPRQDVLDQ 

       130        140        150        160        170        180 
YRQDEHKYQS LKLFGDLSKP LFSEEDFVEA FGIKDWKDKW QVQNGRITGG PTDPGLPTLR 

       190        200        210        220        230        240 
VCEHVVEQQR AYLKALKAIG VKGFRIDAAK HMTLEHLKRV WTDDITQDVH IFGEIITDGG 

       250        260        270        280        290        300 
ATEEEYQLFL EPYLQETRLG AYDFPLFSTI FKAFSKKGSF KSLIDPYCFG QALSNGRAIT 

       310        320        330        340        350        360 
FVVTHDIPNN DVFLDLIMDE EDEWIAYAYI LGRDGGVPLV YTDLDTSGIK NKNGKPRWKD 

       370        380        390        400        410        420 
AWNDPRMAKM IAFHNVTHGE SMTVLEGNDD MLVLKRGEKG IVVLNKSTRA QSLSLKTECD 

       430        440 
WFDLMSDQSV KAGIELKVPA KSFMLLVQK 

« Hide

References

[1]"100K Food-borne pathogen sequencing project."
100K Food-borne pathogen sequencing consortium
Jones J., Zhao S., Xie Y., Thao K., Dao N., Clark T.A., Boitano M., Korlach J., Weimer B.
Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: CDC_K4557 EMBL AGQ96120.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP006007 Genomic DNA. Translation: AGQ96120.1.
RefSeqYP_008269559.1. NC_021822.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAGQ96120; AGQ96120; M636_01530.
GeneID16889519.
KEGGvpk:M636_01530.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01176.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSPR00110. ALPHAAMYLASE.
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameS5J706_VIBPH
AccessionPrimary (citable) accession number: S5J706
Entry history
Integrated into UniProtKB/TrEMBL: October 16, 2013
Last sequence update: October 16, 2013
Last modified: July 9, 2014
This is version 7 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)