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S5J6R5 (S5J6R5_VIBPH) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 6. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length686 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
S5J6R5 [UniParc].

Last modified October 16, 2013. Version 1.
Checksum: 7DA3202FA9ADBFF7

FASTA68677,040
        10         20         30         40         50         60 
MKLNLITTTL LLVSASAIAE PNITISTTTN SRDFPLSVEQ PLVVPLTKDG YTLKITGVEG 

        70         80         90        100        110        120 
DCVAPDGQKV KFNKPIALNC GKPTELPLKV RFTGDYSFAY DDVVKTLLFK REPKKAAKTE 

       130        140        150        160        170        180 
FKRPIPQVQC EVYQGGEVTI ALGDSFPEGT KLRDAYSGQM VEVKEQKVSL TPSKDSGGLV 

       190        200        210        220        230        240 
LLEPVQKTKE AVPFDYRNAN IYFVMVDRFN NADASNDNSY GRKKDGKDEV GTFHGGDLKG 

       250        260        270        280        290        300 
VIEKLDYIKS LGTDAIWLSP IVEQVHGFVG GGDSGSFPFY AYHGYWTRDF TKIDENFGNE 

       310        320        330        340        350        360 
EDLKTLVEEA HKRGLKVLMD AVINHSGYST LADLQFDGID VLKPNAELPK KWGDWQPKAG 

       370        380        390        400        410        420 
ENWHSYHQNI DYQSPNWAKW WGGDWVRTGL PGYPAPGSSD ITMSLAGLPD FITESDKAVK 

       430        440        450        460        470        480 
PAQWLLDNPG TRVEARDNYT VSDYLIEWQT DWVKRFGIDG YRVDTVKHVE GEVWKRLKEE 

       490        500        510        520        530        540 
ASNSLEQWRK ENGKSGQPFW MMGEVWGHTA YRSPYFDDGF DALINFDMQK KLDKGAACFS 

       550        560        570        580        590        600 
QMADTYQSYA DTIANEKDFN PVSYMSSHDT ELFFSRFKDY GMQRNAANAL LLSPGAVQVY 

       610        620        630        640        650        660 
YGDEVGRNIG PYADDFHQGT RSDMVWKLSD DKQALLKHWQ TLGQFRQAHP AIGAGQHQVI 

       670        680 
EQEGAYVFSR LLGNDKVVVA FVGRDK 

« Hide

References

[1]"100K Food-borne pathogen sequencing project."
100K Food-borne pathogen sequencing consortium
Jones J., Zhao S., Xie Y., Thao K., Dao N., Clark T.A., Boitano M., Korlach J., Weimer B.
Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: FDA_R31 EMBL AGQ92716.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP006005 Genomic DNA. Translation: AGQ92716.1.
RefSeqYP_008267852.1. NC_021821.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAGQ92716; AGQ92716; M634_17540.
GeneID16894721.
KEGGvpf:M634_17540.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01176.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameS5J6R5_VIBPH
AccessionPrimary (citable) accession number: S5J6R5
Entry history
Integrated into UniProtKB/TrEMBL: October 16, 2013
Last sequence update: October 16, 2013
Last modified: June 11, 2014
This is version 6 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)