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S5IQ22 (S5IQ22_VIBPH) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 7. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length192 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + thymidine = ADP + thymidine 5'-phosphate. HAMAP-Rule MF_00124 RuleBase RU000544 SAAS SAAS020634

Subunit structure

Homotetramer By similarity. HAMAP-Rule MF_00124 SAAS SAAS020634

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00124 SAAS SAAS020634.

Sequence similarities

Belongs to the thymidine kinase family. HAMAP-Rule MF_00124 RuleBase RU004165

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding9 – 168ATP By similarity HAMAP-Rule MF_00124
Nucleotide binding87 – 904ATP By similarity HAMAP-Rule MF_00124

Sites

Active site881Proton acceptor By similarity HAMAP-Rule MF_00124
Metal binding1451Zinc By similarity HAMAP-Rule MF_00124
Metal binding1471Zinc By similarity HAMAP-Rule MF_00124
Metal binding1821Zinc By similarity HAMAP-Rule MF_00124
Metal binding1851Zinc By similarity HAMAP-Rule MF_00124

Sequences

Sequence LengthMass (Da)Tools
S5IQ22 [UniParc].

Last modified October 16, 2013. Version 1.
Checksum: 2A2507347D19F07C

FASTA19221,825
        10         20         30         40         50         60 
MAQMYFYYSA MNAGKSTTLL QSSFNYQERG MTPVIFTAAL DDRYGVGKVS SRIGLQSDAH 

        70         80         90        100        110        120 
LFRPDTNLYQ EIAALHEVEK RHCILIDECQ FLSKEQVYQL TEVVDKLHIP VLCYGLRTDF 

       130        140        150        160        170        180 
LGELFEGSKY LLSWADKLVE LKTICHCGRK ANMVIRTDEH GVAIKEGDQV AIGGNDRYVS 

       190 
VCRQHYKEAL GK 

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References

[1]"100K Food-borne pathogen sequencing project."
100K Food-borne pathogen sequencing consortium
Jones J., Zhao S., Xie Y., Thao K., Dao N., Clark T.A., Boitano M., Korlach J., Weimer B.
Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: FDA_R31 EMBL AGQ90639.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP006004 Genomic DNA. Translation: AGQ90639.1.
RefSeqYP_008313412.1. NC_021847.1.

3D structure databases

ProteinModelPortalS5IQ22.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAGQ90639; AGQ90639; M634_07670.
GeneID16897501.
KEGGvpf:M634_07670.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK00857.

Family and domain databases

HAMAPMF_00124. Thymidine_kinase.
InterProIPR027417. P-loop_NTPase.
IPR001267. Thymidine_kinase.
IPR020633. Thymidine_kinase_CS.
IPR020634. Thymidine_kinase_subgr.
[Graphical view]
PANTHERPTHR11441. PTHR11441. 1 hit.
PfamPF00265. TK. 1 hit.
[Graphical view]
PIRSFPIRSF035805. TK_cell. 1 hit.
SUPFAMSSF52540. SSF52540. 1 hit.
PROSITEPS00603. TK_CELLULAR_TYPE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameS5IQ22_VIBPH
AccessionPrimary (citable) accession number: S5IQ22
Entry history
Integrated into UniProtKB/TrEMBL: October 16, 2013
Last sequence update: October 16, 2013
Last modified: June 11, 2014
This is version 7 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)