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Protein
Submitted name:

Alpha-amylase

Gene

malS

Organism
Vibrio parahaemolyticus O1:Kuk str. FDA_R31
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-amylaseImported
Gene namesi
Name:malSImported
ORF Names:M634_01790Imported
OrganismiVibrio parahaemolyticus O1:Kuk str. FDA_R31Imported
Taxonomic identifieri1338034 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000014929 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Family & Domainsi

Phylogenomic databases

KOiK01176.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

S5IP09-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKTILALSI GLLSACSQIP ENAIVLSVGD DTAVFEPNSD GLLVAEQKLE
60 70 80 90 100
KGNYTFTIAD SKQTCGNSFA LAEESRIKFN TPLKMDNCAT DTSMPLRIFK
110 120 130 140 150
ANTYLFTLNP DTNELTVKIK PKQSQDITYS CPVATDTAKT INVAQTFTDG
160 170 180 190 200
TVVRDALTGQ EATVANGSVT MQPGPMSQGL LLLEEVEQQA DKPFSWDNAT
210 220 230 240 250
VYFVMTDRFY NGNPDNDNSY GRSKDGKYEI GTFHGGDLAG LTKKLDYIES
260 270 280 290 300
LGVNAIWITS PLEQIHGWVG GGDKGDFKHY GYHGYYHQDW TKLDANMGTE
310 320 330 340 350
DELRTFVDTA HKKGIRVIWD VVMNHTGYAT LADMQEFGFG QLYLDDQEAK
360 370 380 390 400
QVLGEEWTDW QPKSGQSWHS FNDYIKYGDS EAWEKWWGKD WIRTDIGDYD
410 420 430 440 450
APGYNDITMS LNYLPDLKTE STQKTGLPNF FRNKNTNAQD ELKTPREHLI
460 470 480 490 500
TWLSDWVRDY GIDGFRVDTA KHVEMEAWAE LKARTTQALA EWKQNHPDKA
510 520 530 540 550
LDDLPFWMTG EVWAHSVVKS PYFDNGFDSI INFEFQSDVA PKALKCFAQL
560 570 580 590 600
DNDYRRYAER INSDPEFNVL SYLSSHDTQL FWSARSRSFD DQARAANALM
610 620 630 640 650
LAPGAVQIYY GDEIARDFGV TGSDPTQGTR SDMPWDKIHG EREDLLQHWQ
660 670 680 690
KLGEFRQRHP AVAQGKHITR NQEGYYAFER QYQDDKVLIV YTGE
Length:694
Mass (Da):78,811
Last modified:October 16, 2013 - v1
Checksum:i3B1C7C12917F5D2F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP006004 Genomic DNA. Translation: AGQ89705.1.
RefSeqiWP_020839865.1. NC_021847.1.

Genome annotation databases

EnsemblBacteriaiAGQ89705; AGQ89705; M634_01790.
KEGGivpf:M634_01790.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP006004 Genomic DNA. Translation: AGQ89705.1.
RefSeqiWP_020839865.1. NC_021847.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAGQ89705; AGQ89705; M634_01790.
KEGGivpf:M634_01790.

Phylogenomic databases

KOiK01176.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete Genome Sequences of a Clinical Isolate and an Environmental Isolate of Vibrio parahaemolyticus."
    Ludeke C.H., Kong N., Weimer B.C., Fischer M., Jones J.L.
    Genome Announc. 3:0-0(2015) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: FDA_R31Imported.

Entry informationi

Entry nameiS5IP09_VIBPH
AccessioniPrimary (citable) accession number: S5IP09
Entry historyi
Integrated into UniProtKB/TrEMBL: October 16, 2013
Last sequence update: October 16, 2013
Last modified: July 22, 2015
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.