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S5IP09 (S5IP09_VIBPH) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 6. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length694 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
S5IP09 [UniParc].

Last modified October 16, 2013. Version 1.
Checksum: 3B1C7C12917F5D2F

FASTA69478,811
        10         20         30         40         50         60 
MKKTILALSI GLLSACSQIP ENAIVLSVGD DTAVFEPNSD GLLVAEQKLE KGNYTFTIAD 

        70         80         90        100        110        120 
SKQTCGNSFA LAEESRIKFN TPLKMDNCAT DTSMPLRIFK ANTYLFTLNP DTNELTVKIK 

       130        140        150        160        170        180 
PKQSQDITYS CPVATDTAKT INVAQTFTDG TVVRDALTGQ EATVANGSVT MQPGPMSQGL 

       190        200        210        220        230        240 
LLLEEVEQQA DKPFSWDNAT VYFVMTDRFY NGNPDNDNSY GRSKDGKYEI GTFHGGDLAG 

       250        260        270        280        290        300 
LTKKLDYIES LGVNAIWITS PLEQIHGWVG GGDKGDFKHY GYHGYYHQDW TKLDANMGTE 

       310        320        330        340        350        360 
DELRTFVDTA HKKGIRVIWD VVMNHTGYAT LADMQEFGFG QLYLDDQEAK QVLGEEWTDW 

       370        380        390        400        410        420 
QPKSGQSWHS FNDYIKYGDS EAWEKWWGKD WIRTDIGDYD APGYNDITMS LNYLPDLKTE 

       430        440        450        460        470        480 
STQKTGLPNF FRNKNTNAQD ELKTPREHLI TWLSDWVRDY GIDGFRVDTA KHVEMEAWAE 

       490        500        510        520        530        540 
LKARTTQALA EWKQNHPDKA LDDLPFWMTG EVWAHSVVKS PYFDNGFDSI INFEFQSDVA 

       550        560        570        580        590        600 
PKALKCFAQL DNDYRRYAER INSDPEFNVL SYLSSHDTQL FWSARSRSFD DQARAANALM 

       610        620        630        640        650        660 
LAPGAVQIYY GDEIARDFGV TGSDPTQGTR SDMPWDKIHG EREDLLQHWQ KLGEFRQRHP 

       670        680        690 
AVAQGKHITR NQEGYYAFER QYQDDKVLIV YTGE 

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References

[1]"100K Food-borne pathogen sequencing project."
100K Food-borne pathogen sequencing consortium
Jones J., Zhao S., Xie Y., Thao K., Dao N., Clark T.A., Boitano M., Korlach J., Weimer B.
Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: FDA_R31 EMBL AGQ89705.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP006004 Genomic DNA. Translation: AGQ89705.1.
RefSeqYP_008312291.1. NC_021847.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAGQ89705; AGQ89705; M634_01790.
GeneID16896327.
KEGGvpf:M634_01790.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01176.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameS5IP09_VIBPH
AccessionPrimary (citable) accession number: S5IP09
Entry history
Integrated into UniProtKB/TrEMBL: October 16, 2013
Last sequence update: October 16, 2013
Last modified: June 11, 2014
This is version 6 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)