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S5CGD1 (S5CGD1_ALTMA) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 7. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length439 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-xylopyranose = D-xylulose. HAMAP-Rule MF_00455 SAAS SAAS001998 RuleBase RU000609

Cofactor

Binds 2 magnesium ions per subunit By similarity. HAMAP-Rule MF_00455

Subunit structure

Homotetramer By similarity. HAMAP-Rule MF_00455 SAAS SAAS001998

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00455 SAAS SAAS001998.

Sequence similarities

Belongs to the xylose isomerase family. HAMAP-Rule MF_00455 RuleBase RU000609

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1011 By similarity HAMAP-Rule MF_00455
Active site1041 By similarity HAMAP-Rule MF_00455
Metal binding2321Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2681Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2681Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2711Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2961Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding3071Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3091Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3391Magnesium 1 By similarity HAMAP-Rule MF_00455

Sequences

Sequence LengthMass (Da)Tools
S5CGD1 [UniParc].

Last modified October 16, 2013. Version 1.
Checksum: E76FB38E83CBA438

FASTA43949,028
        10         20         30         40         50         60 
MSAYFENIKP IQYEGPESDN DLAFHYYNPE EVIMGKTMAE HLRFAACYWH NFCWDGADVF 

        70         80         90        100        110        120 
GQGTFGRPWL KDGDPMKRAV EKADVAFDFF SKLNVPYYCF HDTDVAPGGD TINEYISNFS 

       130        140        150        160        170        180 
SMVDVLEEKQ AQTGLKLLWG TANLFSHPRY CAGGASNPDP EVFTFGATQV FHAMNATKRL 

       190        200        210        220        230        240 
GGENYVLWGG REGYENLLNT NLKKEDEQLG RFFTMVAEHK HKIGFKGALL IEPKPQEPTK 

       250        260        270        280        290        300 
HQYDYDSATV YGFLKRYGLE DEFKVNIEAN HATLAGHSFH HEIATAIALG IFGSIDANRG 

       310        320        330        340        350        360 
DAQNGWDTDQ FPNAVDELTL VMYEILKNGG FTTGGLNFDC KLRRQSCDPA DLFHGHIGGM 

       370        380        390        400        410        420 
DHMALALRKA AKLIDSDFLA QAKEARYKGW QSDLGVAIDS GKHSLESLAE HCVSNNLAPK 

       430 
AVSGQQELLE NKLNRALFG 

« Hide

References

[1]"Genomic Diversity of "Deep Ecotype" Alteromonas macleodii Isolates: Evidence for Pan-Mediterranean Clonal Frames."
Lopez-Perez M., Gonzaga A., Rodriguez-Valera F.
Genome Biol. Evol. 5:1220-1232(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Ionian Sea UM4b EMBL AGQ03601.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP004855 Genomic DNA. Translation: AGQ03601.1.
RefSeqYP_008185721.1. NC_021714.1.

3D structure databases

ProteinModelPortalS5CGD1.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAGQ03601; AGQ03601; I636_18910.
GeneID16095538.
KEGGamad:I636_18910.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01805.

Family and domain databases

Gene3D3.20.20.150. 1 hit.
HAMAPMF_00455. Xylose_isom_A.
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSPR00688. XYLOSISMRASE.
SUPFAMSSF51658. SSF51658. 1 hit.
TIGRFAMsTIGR02630. xylose_isom_A. 1 hit.
PROSITEPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameS5CGD1_ALTMA
AccessionPrimary (citable) accession number: S5CGD1
Entry history
Integrated into UniProtKB/TrEMBL: October 16, 2013
Last sequence update: October 16, 2013
Last modified: June 11, 2014
This is version 7 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)