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S5CGD1

- S5CGD1_ALTMA

UniProt

S5CGD1 - S5CGD1_ALTMA

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Protein
Xylose isomerase
Gene
xylA, I636_18910
Organism
Alteromonas macleodii str. 'Ionian Sea UM4b'
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

D-xylopyranose = D-xylulose.UniRule annotationSAAS annotations

Cofactori

Binds 2 magnesium ions per subunit By similarity.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei101 – 1011 By similarityUniRule annotation
Active sitei104 – 1041 By similarityUniRule annotation
Metal bindingi232 – 2321Magnesium 1 By similarityUniRule annotation
Metal bindingi268 – 2681Magnesium 1 By similarityUniRule annotation
Metal bindingi268 – 2681Magnesium 2 By similarityUniRule annotation
Metal bindingi271 – 2711Magnesium 2 By similarityUniRule annotation
Metal bindingi296 – 2961Magnesium 1 By similarityUniRule annotation
Metal bindingi307 – 3071Magnesium 2 By similarityUniRule annotation
Metal bindingi309 – 3091Magnesium 2 By similarityUniRule annotation
Metal bindingi339 – 3391Magnesium 1 By similarityUniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. xylose isomerase activity Source: UniProtKB-HAMAP
Complete GO annotation...

GO - Biological processi

  1. D-xylose metabolic process Source: UniProtKB-HAMAP
  2. pentose-phosphate shunt Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotationsImported

Keywords - Biological processi

Carbohydrate metabolism, Pentose shuntUniRule annotationSAAS annotations, Xylose metabolismUniRule annotationSAAS annotations

Keywords - Ligandi

MagnesiumUniRule annotationSAAS annotations, Metal-bindingUniRule annotationSAAS annotations

Names & Taxonomyi

Protein namesi
Recommended name:
Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
Gene namesi
Name:xylAUniRule annotation
ORF Names:I636_18910Imported
OrganismiAlteromonas macleodii str. 'Ionian Sea UM4b'Imported
Taxonomic identifieri1300259 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas
ProteomesiUP000014903: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotationSAAS annotations

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotations

Interactioni

Subunit structurei

Homotetramer By similarity.UniRule annotationSAAS annotations

Structurei

3D structure databases

ProteinModelPortaliS5CGD1.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

KOiK01805.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
HAMAPiMF_00455. Xylose_isom_A.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSiPR00688. XYLOSISMRASE.
SUPFAMiSSF51658. SSF51658. 1 hit.
TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

S5CGD1-1 [UniParc]FASTAAdd to Basket

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MSAYFENIKP IQYEGPESDN DLAFHYYNPE EVIMGKTMAE HLRFAACYWH    50
NFCWDGADVF GQGTFGRPWL KDGDPMKRAV EKADVAFDFF SKLNVPYYCF 100
HDTDVAPGGD TINEYISNFS SMVDVLEEKQ AQTGLKLLWG TANLFSHPRY 150
CAGGASNPDP EVFTFGATQV FHAMNATKRL GGENYVLWGG REGYENLLNT 200
NLKKEDEQLG RFFTMVAEHK HKIGFKGALL IEPKPQEPTK HQYDYDSATV 250
YGFLKRYGLE DEFKVNIEAN HATLAGHSFH HEIATAIALG IFGSIDANRG 300
DAQNGWDTDQ FPNAVDELTL VMYEILKNGG FTTGGLNFDC KLRRQSCDPA 350
DLFHGHIGGM DHMALALRKA AKLIDSDFLA QAKEARYKGW QSDLGVAIDS 400
GKHSLESLAE HCVSNNLAPK AVSGQQELLE NKLNRALFG 439
Length:439
Mass (Da):49,028
Last modified:October 16, 2013 - v1
Checksum:iE76FB38E83CBA438
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP004855 Genomic DNA. Translation: AGQ03601.1.
RefSeqiYP_008185721.1. NC_021714.1.

Genome annotation databases

EnsemblBacteriaiAGQ03601; AGQ03601; I636_18910.
GeneIDi16095538.
KEGGiamad:I636_18910.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP004855 Genomic DNA. Translation: AGQ03601.1 .
RefSeqi YP_008185721.1. NC_021714.1.

3D structure databases

ProteinModelPortali S5CGD1.
ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AGQ03601 ; AGQ03601 ; I636_18910 .
GeneIDi 16095538.
KEGGi amad:I636_18910.

Phylogenomic databases

KOi K01805.

Family and domain databases

Gene3Di 3.20.20.150. 1 hit.
HAMAPi MF_00455. Xylose_isom_A.
InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view ]
Pfami PF01261. AP_endonuc_2. 1 hit.
[Graphical view ]
PRINTSi PR00688. XYLOSISMRASE.
SUPFAMi SSF51658. SSF51658. 1 hit.
TIGRFAMsi TIGR02630. xylose_isom_A. 1 hit.
PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genomic Diversity of "Deep Ecotype" Alteromonas macleodii Isolates: Evidence for Pan-Mediterranean Clonal Frames."
    Lopez-Perez M., Gonzaga A., Rodriguez-Valera F.
    Genome Biol. Evol. 5:1220-1232(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Ionian Sea UM4bImported.

Entry informationi

Entry nameiS5CGD1_ALTMA
AccessioniPrimary (citable) accession number: S5CGD1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 16, 2013
Last sequence update: October 16, 2013
Last modified: June 11, 2014
This is version 7 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi