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S5CGD1

- S5CGD1_ALTMA

UniProt

S5CGD1 - S5CGD1_ALTMA

Protein

Xylose isomerase

Gene

xylA

Organism
Alteromonas macleodii str. 'Ionian Sea UM4b'
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 8 (01 Oct 2014)
      Sequence version 1 (16 Oct 2013)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    D-xylopyranose = D-xylulose.UniRule annotationSAAS annotation

    Cofactori

    Binds 2 magnesium ions per subunit.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei101 – 1011UniRule annotation
    Active sitei104 – 1041UniRule annotation
    Metal bindingi232 – 2321Magnesium 1UniRule annotation
    Metal bindingi268 – 2681Magnesium 1UniRule annotation
    Metal bindingi268 – 2681Magnesium 2UniRule annotation
    Metal bindingi271 – 2711Magnesium 2UniRule annotation
    Metal bindingi296 – 2961Magnesium 1UniRule annotation
    Metal bindingi307 – 3071Magnesium 2UniRule annotation
    Metal bindingi309 – 3091Magnesium 2UniRule annotation
    Metal bindingi339 – 3391Magnesium 1UniRule annotation

    GO - Molecular functioni

    1. magnesium ion binding Source: UniProtKB-HAMAP
    2. xylose isomerase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. D-xylose metabolic process Source: UniProtKB-HAMAP
    2. pentose-phosphate shunt Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    IsomeraseUniRule annotationSAAS annotationImported

    Keywords - Biological processi

    Carbohydrate metabolism, Pentose shuntUniRule annotationSAAS annotation, Xylose metabolismUniRule annotationSAAS annotation

    Keywords - Ligandi

    MagnesiumUniRule annotationSAAS annotation, Metal-bindingUniRule annotationSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
    Gene namesi
    Name:xylAUniRule annotation
    ORF Names:I636_18910Imported
    OrganismiAlteromonas macleodii str. 'Ionian Sea UM4b'Imported
    Taxonomic identifieri1300259 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas
    ProteomesiUP000014903: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotationSAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotationSAAS annotation

    Interactioni

    Subunit structurei

    Homotetramer.UniRule annotationSAAS annotation

    Structurei

    3D structure databases

    ProteinModelPortaliS5CGD1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the xylose isomerase family.UniRule annotation

    Phylogenomic databases

    KOiK01805.

    Family and domain databases

    Gene3Di3.20.20.150. 1 hit.
    HAMAPiMF_00455. Xylose_isom_A.
    InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013452. Xylose_isom_bac.
    IPR001998. Xylose_isomerase.
    [Graphical view]
    PfamiPF01261. AP_endonuc_2. 1 hit.
    [Graphical view]
    PRINTSiPR00688. XYLOSISMRASE.
    SUPFAMiSSF51658. SSF51658. 1 hit.
    TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
    PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    S5CGD1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSAYFENIKP IQYEGPESDN DLAFHYYNPE EVIMGKTMAE HLRFAACYWH    50
    NFCWDGADVF GQGTFGRPWL KDGDPMKRAV EKADVAFDFF SKLNVPYYCF 100
    HDTDVAPGGD TINEYISNFS SMVDVLEEKQ AQTGLKLLWG TANLFSHPRY 150
    CAGGASNPDP EVFTFGATQV FHAMNATKRL GGENYVLWGG REGYENLLNT 200
    NLKKEDEQLG RFFTMVAEHK HKIGFKGALL IEPKPQEPTK HQYDYDSATV 250
    YGFLKRYGLE DEFKVNIEAN HATLAGHSFH HEIATAIALG IFGSIDANRG 300
    DAQNGWDTDQ FPNAVDELTL VMYEILKNGG FTTGGLNFDC KLRRQSCDPA 350
    DLFHGHIGGM DHMALALRKA AKLIDSDFLA QAKEARYKGW QSDLGVAIDS 400
    GKHSLESLAE HCVSNNLAPK AVSGQQELLE NKLNRALFG 439
    Length:439
    Mass (Da):49,028
    Last modified:October 16, 2013 - v1
    Checksum:iE76FB38E83CBA438
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP004855 Genomic DNA. Translation: AGQ03601.1.
    RefSeqiYP_008185721.1. NC_021714.1.

    Genome annotation databases

    EnsemblBacteriaiAGQ03601; AGQ03601; I636_18910.
    GeneIDi16095538.
    KEGGiamad:I636_18910.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP004855 Genomic DNA. Translation: AGQ03601.1 .
    RefSeqi YP_008185721.1. NC_021714.1.

    3D structure databases

    ProteinModelPortali S5CGD1.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AGQ03601 ; AGQ03601 ; I636_18910 .
    GeneIDi 16095538.
    KEGGi amad:I636_18910.

    Phylogenomic databases

    KOi K01805.

    Family and domain databases

    Gene3Di 3.20.20.150. 1 hit.
    HAMAPi MF_00455. Xylose_isom_A.
    InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013452. Xylose_isom_bac.
    IPR001998. Xylose_isomerase.
    [Graphical view ]
    Pfami PF01261. AP_endonuc_2. 1 hit.
    [Graphical view ]
    PRINTSi PR00688. XYLOSISMRASE.
    SUPFAMi SSF51658. SSF51658. 1 hit.
    TIGRFAMsi TIGR02630. xylose_isom_A. 1 hit.
    PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genomic Diversity of "Deep Ecotype" Alteromonas macleodii Isolates: Evidence for Pan-Mediterranean Clonal Frames."
      Lopez-Perez M., Gonzaga A., Rodriguez-Valera F.
      Genome Biol. Evol. 5:1220-1232(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Ionian Sea UM4bImported.

    Entry informationi

    Entry nameiS5CGD1_ALTMA
    AccessioniPrimary (citable) accession number: S5CGD1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 16, 2013
    Last sequence update: October 16, 2013
    Last modified: October 1, 2014
    This is version 8 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3