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S5CGD1

- S5CGD1_ALTMA

UniProt

S5CGD1 - S5CGD1_ALTMA

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Protein

Xylose isomerase

Gene

xylA

Organism
Alteromonas macleodii str. 'Ionian Sea UM4b'
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

D-xylopyranose = D-xylulose.UniRule annotationSAAS annotation

Cofactori

Binds 2 magnesium ions per subunit.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei101 – 1011UniRule annotation
Active sitei104 – 1041UniRule annotation
Metal bindingi232 – 2321Magnesium 1UniRule annotation
Metal bindingi268 – 2681Magnesium 1UniRule annotation
Metal bindingi268 – 2681Magnesium 2UniRule annotation
Metal bindingi271 – 2711Magnesium 2UniRule annotation
Metal bindingi296 – 2961Magnesium 1UniRule annotation
Metal bindingi307 – 3071Magnesium 2UniRule annotation
Metal bindingi309 – 3091Magnesium 2UniRule annotation
Metal bindingi339 – 3391Magnesium 1UniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. xylose isomerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. D-xylose metabolic process Source: UniProtKB-HAMAP
  2. pentose-phosphate shunt Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotation

Keywords - Biological processi

Carbohydrate metabolism, Pentose shuntUniRule annotation, Xylose metabolismUniRule annotation

Keywords - Ligandi

MagnesiumUniRule annotationSAAS annotation, Metal-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
Gene namesi
Name:xylAUniRule annotation
ORF Names:I636_18910Imported
OrganismiAlteromonas macleodii str. 'Ionian Sea UM4b'Imported
Taxonomic identifieri1300259 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas
ProteomesiUP000014903: Chromosome

Subcellular locationi

Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Homotetramer.UniRule annotationSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliS5CGD1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the xylose isomerase family.UniRule annotation

Phylogenomic databases

KOiK01805.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
HAMAPiMF_00455. Xylose_isom_A.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSiPR00688. XYLOSISMRASE.
SUPFAMiSSF51658. SSF51658. 1 hit.
TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

S5CGD1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSAYFENIKP IQYEGPESDN DLAFHYYNPE EVIMGKTMAE HLRFAACYWH
60 70 80 90 100
NFCWDGADVF GQGTFGRPWL KDGDPMKRAV EKADVAFDFF SKLNVPYYCF
110 120 130 140 150
HDTDVAPGGD TINEYISNFS SMVDVLEEKQ AQTGLKLLWG TANLFSHPRY
160 170 180 190 200
CAGGASNPDP EVFTFGATQV FHAMNATKRL GGENYVLWGG REGYENLLNT
210 220 230 240 250
NLKKEDEQLG RFFTMVAEHK HKIGFKGALL IEPKPQEPTK HQYDYDSATV
260 270 280 290 300
YGFLKRYGLE DEFKVNIEAN HATLAGHSFH HEIATAIALG IFGSIDANRG
310 320 330 340 350
DAQNGWDTDQ FPNAVDELTL VMYEILKNGG FTTGGLNFDC KLRRQSCDPA
360 370 380 390 400
DLFHGHIGGM DHMALALRKA AKLIDSDFLA QAKEARYKGW QSDLGVAIDS
410 420 430
GKHSLESLAE HCVSNNLAPK AVSGQQELLE NKLNRALFG
Length:439
Mass (Da):49,028
Last modified:October 16, 2013 - v1
Checksum:iE76FB38E83CBA438
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP004855 Genomic DNA. Translation: AGQ03601.1.
RefSeqiWP_015068489.1. NC_021714.1.
YP_008185721.1. NC_021714.1.

Genome annotation databases

EnsemblBacteriaiAGQ03601; AGQ03601; I636_18910.
GeneIDi16095538.
KEGGiamad:I636_18910.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP004855 Genomic DNA. Translation: AGQ03601.1 .
RefSeqi WP_015068489.1. NC_021714.1.
YP_008185721.1. NC_021714.1.

3D structure databases

ProteinModelPortali S5CGD1.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AGQ03601 ; AGQ03601 ; I636_18910 .
GeneIDi 16095538.
KEGGi amad:I636_18910.

Phylogenomic databases

KOi K01805.

Family and domain databases

Gene3Di 3.20.20.150. 1 hit.
HAMAPi MF_00455. Xylose_isom_A.
InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view ]
Pfami PF01261. AP_endonuc_2. 1 hit.
[Graphical view ]
PRINTSi PR00688. XYLOSISMRASE.
SUPFAMi SSF51658. SSF51658. 1 hit.
TIGRFAMsi TIGR02630. xylose_isom_A. 1 hit.
PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genomic Diversity of "Deep Ecotype" Alteromonas macleodii Isolates: Evidence for Pan-Mediterranean Clonal Frames."
    Lopez-Perez M., Gonzaga A., Rodriguez-Valera F.
    Genome Biol. Evol. 5:1220-1232(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Ionian Sea UM4bImported.

Entry informationi

Entry nameiS5CGD1_ALTMA
AccessioniPrimary (citable) accession number: S5CGD1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 16, 2013
Last sequence update: October 16, 2013
Last modified: October 29, 2014
This is version 9 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3