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S4XMX3

- S4XMX3_SORCE

UniProt

S4XMX3 - S4XMX3_SORCE

Protein

Xylose isomerase

Gene

xylA

Organism
Sorangium cellulosum So0157-2
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 9 (01 Oct 2014)
      Sequence version 1 (16 Oct 2013)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    D-xylopyranose = D-xylulose.UniRule annotationSAAS annotation

    Cofactori

    Binds 2 magnesium ions per subunit.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei107 – 1071UniRule annotation
    Active sitei110 – 1101UniRule annotation
    Metal bindingi238 – 2381Magnesium 1UniRule annotation
    Metal bindingi274 – 2741Magnesium 1UniRule annotation
    Metal bindingi274 – 2741Magnesium 2UniRule annotation
    Metal bindingi277 – 2771Magnesium 2UniRule annotation
    Metal bindingi302 – 3021Magnesium 1UniRule annotation
    Metal bindingi313 – 3131Magnesium 2UniRule annotation
    Metal bindingi315 – 3151Magnesium 2UniRule annotation
    Metal bindingi345 – 3451Magnesium 1UniRule annotation

    GO - Molecular functioni

    1. magnesium ion binding Source: UniProtKB-HAMAP
    2. xylose isomerase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. D-xylose metabolic process Source: UniProtKB-HAMAP
    2. pentose-phosphate shunt Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    IsomeraseUniRule annotationSAAS annotationImported

    Keywords - Biological processi

    Carbohydrate metabolism, Pentose shuntUniRule annotationSAAS annotation, Xylose metabolismUniRule annotationSAAS annotation

    Keywords - Ligandi

    MagnesiumUniRule annotationSAAS annotation, Metal-bindingUniRule annotationSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
    Gene namesi
    Name:xylAUniRule annotation
    ORF Names:SCE1572_08390Imported
    OrganismiSorangium cellulosum So0157-2Imported
    Taxonomic identifieri1254432 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesSorangiineaePolyangiaceaeSorangium
    ProteomesiUP000014803: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotationSAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotationSAAS annotation

    Interactioni

    Subunit structurei

    Homotetramer.UniRule annotationSAAS annotation

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the xylose isomerase family.UniRule annotation

    Phylogenomic databases

    KOiK01805.

    Family and domain databases

    Gene3Di3.20.20.150. 1 hit.
    HAMAPiMF_00455. Xylose_isom_A.
    InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013452. Xylose_isom_bac.
    IPR001998. Xylose_isomerase.
    [Graphical view]
    PfamiPF01261. AP_endonuc_2. 1 hit.
    [Graphical view]
    PRINTSiPR00688. XYLOSISMRASE.
    SUPFAMiSSF51658. SSF51658. 1 hit.
    TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
    PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    S4XMX3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTVVIGDKEY FPGVGKIPYE GPESDNPLAF KWYDEKRVVA GKAMKDHFKF    50
    AVCYWHTFCG RGHDPFGPGT IHFPWDEGKD ALARARMKMD ASFEFITKLG 100
    ATHYCFHDID LVEEGDSRAE TSRRLQSIVE YAKQKQAQSG IKLLWGTANL 150
    FSNPRYMNGA STNPDFAVVA YAGAQLKDAL DATIALNGEN YVFWGGREGY 200
    MSLLNTDMKR EKDHFARFLT LARDYARSRG FKGTFFIEPK PMEPSKHQYD 250
    FDAETVIGFL RQHGLDKDFK LNLETNHATL AGHTMEHEMQ VAADAGMLGS 300
    IDANRGDYQN AWDTDQFPYN INETVEMMLI LLRSGGLQGG GVNFDAKRRR 350
    NSTDLIDTFH GHIGGMDVFA RALIIADDLI RKSPLEAMRK ARYASFDGGK 400
    GAEFEQGKLT LEQLAEIGNA GGEVKLTSGQ QELYENIVNR YIR 443
    Length:443
    Mass (Da):49,802
    Last modified:October 16, 2013 - v1
    Checksum:i0956AD5FD46A82E9
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003969 Genomic DNA. Translation: AGP34522.1.
    RefSeqiWP_020733663.1. NC_021658.1.
    YP_008148129.1. NC_021658.1.

    Genome annotation databases

    EnsemblBacteriaiAGP34522; AGP34522; SCE1572_08390.
    GeneIDi16058504.
    KEGGiscu:SCE1572_08390.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003969 Genomic DNA. Translation: AGP34522.1 .
    RefSeqi WP_020733663.1. NC_021658.1.
    YP_008148129.1. NC_021658.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AGP34522 ; AGP34522 ; SCE1572_08390 .
    GeneIDi 16058504.
    KEGGi scu:SCE1572_08390.

    Phylogenomic databases

    KOi K01805.

    Family and domain databases

    Gene3Di 3.20.20.150. 1 hit.
    HAMAPi MF_00455. Xylose_isom_A.
    InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013452. Xylose_isom_bac.
    IPR001998. Xylose_isomerase.
    [Graphical view ]
    Pfami PF01261. AP_endonuc_2. 1 hit.
    [Graphical view ]
    PRINTSi PR00688. XYLOSISMRASE.
    SUPFAMi SSF51658. SSF51658. 1 hit.
    TIGRFAMsi TIGR02630. xylose_isom_A. 1 hit.
    PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Extraordinary expansion of a Sorangium cellulosum genome from an alkaline milieu."
      Han K., Li Z.F., Peng R., Zhu L.P., Zhou T., Wang L.G., Li S.G., Zhang X.B., Hu W., Wu Z.H., Qin N., Li Y.Z.
      Sci. Rep. 3:2101-2101(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: So0157-2Imported.

    Entry informationi

    Entry nameiS4XMX3_SORCE
    AccessioniPrimary (citable) accession number: S4XMX3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 16, 2013
    Last sequence update: October 16, 2013
    Last modified: October 1, 2014
    This is version 9 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3