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S4XMX3

- S4XMX3_SORCE

UniProt

S4XMX3 - S4XMX3_SORCE

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Protein

Xylose isomerase

Gene

xylA

Organism
Sorangium cellulosum So0157-2
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

D-xylopyranose = D-xylulose.UniRule annotationSAAS annotation

Cofactori

Binds 2 magnesium ions per subunit.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei107 – 1071UniRule annotation
Active sitei110 – 1101UniRule annotation
Metal bindingi238 – 2381Magnesium 1UniRule annotation
Metal bindingi274 – 2741Magnesium 1UniRule annotation
Metal bindingi274 – 2741Magnesium 2UniRule annotation
Metal bindingi277 – 2771Magnesium 2UniRule annotation
Metal bindingi302 – 3021Magnesium 1UniRule annotation
Metal bindingi313 – 3131Magnesium 2UniRule annotation
Metal bindingi315 – 3151Magnesium 2UniRule annotation
Metal bindingi345 – 3451Magnesium 1UniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. xylose isomerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. D-xylose metabolic process Source: UniProtKB-HAMAP
  2. pentose-phosphate shunt Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotation

Keywords - Biological processi

Carbohydrate metabolism, Pentose shuntUniRule annotation, Xylose metabolismUniRule annotation

Keywords - Ligandi

MagnesiumUniRule annotationSAAS annotation, Metal-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
Gene namesi
Name:xylAUniRule annotation
ORF Names:SCE1572_08390Imported
OrganismiSorangium cellulosum So0157-2Imported
Taxonomic identifieri1254432 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesSorangiineaePolyangiaceaeSorangium
ProteomesiUP000014803: Chromosome

Subcellular locationi

Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Homotetramer.UniRule annotationSAAS annotation

Family & Domainsi

Sequence similaritiesi

Belongs to the xylose isomerase family.UniRule annotation

Phylogenomic databases

KOiK01805.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
HAMAPiMF_00455. Xylose_isom_A.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSiPR00688. XYLOSISMRASE.
SUPFAMiSSF51658. SSF51658. 1 hit.
TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

S4XMX3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTVVIGDKEY FPGVGKIPYE GPESDNPLAF KWYDEKRVVA GKAMKDHFKF
60 70 80 90 100
AVCYWHTFCG RGHDPFGPGT IHFPWDEGKD ALARARMKMD ASFEFITKLG
110 120 130 140 150
ATHYCFHDID LVEEGDSRAE TSRRLQSIVE YAKQKQAQSG IKLLWGTANL
160 170 180 190 200
FSNPRYMNGA STNPDFAVVA YAGAQLKDAL DATIALNGEN YVFWGGREGY
210 220 230 240 250
MSLLNTDMKR EKDHFARFLT LARDYARSRG FKGTFFIEPK PMEPSKHQYD
260 270 280 290 300
FDAETVIGFL RQHGLDKDFK LNLETNHATL AGHTMEHEMQ VAADAGMLGS
310 320 330 340 350
IDANRGDYQN AWDTDQFPYN INETVEMMLI LLRSGGLQGG GVNFDAKRRR
360 370 380 390 400
NSTDLIDTFH GHIGGMDVFA RALIIADDLI RKSPLEAMRK ARYASFDGGK
410 420 430 440
GAEFEQGKLT LEQLAEIGNA GGEVKLTSGQ QELYENIVNR YIR
Length:443
Mass (Da):49,802
Last modified:October 16, 2013 - v1
Checksum:i0956AD5FD46A82E9
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003969 Genomic DNA. Translation: AGP34522.1.
RefSeqiYP_008148129.1. NC_021658.1.

Genome annotation databases

EnsemblBacteriaiAGP34522; AGP34522; SCE1572_08390.
GeneIDi16058504.
KEGGiscu:SCE1572_08390.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003969 Genomic DNA. Translation: AGP34522.1 .
RefSeqi YP_008148129.1. NC_021658.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AGP34522 ; AGP34522 ; SCE1572_08390 .
GeneIDi 16058504.
KEGGi scu:SCE1572_08390.

Phylogenomic databases

KOi K01805.

Family and domain databases

Gene3Di 3.20.20.150. 1 hit.
HAMAPi MF_00455. Xylose_isom_A.
InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view ]
Pfami PF01261. AP_endonuc_2. 1 hit.
[Graphical view ]
PRINTSi PR00688. XYLOSISMRASE.
SUPFAMi SSF51658. SSF51658. 1 hit.
TIGRFAMsi TIGR02630. xylose_isom_A. 1 hit.
PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Extraordinary expansion of a Sorangium cellulosum genome from an alkaline milieu."
    Han K., Li Z.F., Peng R., Zhu L.P., Zhou T., Wang L.G., Li S.G., Zhang X.B., Hu W., Wu Z.H., Qin N., Li Y.Z.
    Sci. Rep. 3:2101-2101(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: So0157-2Imported.

Entry informationi

Entry nameiS4XMX3_SORCE
AccessioniPrimary (citable) accession number: S4XMX3
Entry historyi
Integrated into UniProtKB/TrEMBL: October 16, 2013
Last sequence update: October 16, 2013
Last modified: October 29, 2014
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3