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S4XMX3 (S4XMX3_SORCE) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 7. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length443 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-xylopyranose = D-xylulose. HAMAP-Rule MF_00455 SAAS SAAS001998 RuleBase RU000609

Cofactor

Binds 2 magnesium ions per subunit By similarity. HAMAP-Rule MF_00455

Subunit structure

Homotetramer By similarity. HAMAP-Rule MF_00455 SAAS SAAS001998

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00455 SAAS SAAS001998.

Sequence similarities

Belongs to the xylose isomerase family. HAMAP-Rule MF_00455 RuleBase RU000609

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1071 By similarity HAMAP-Rule MF_00455
Active site1101 By similarity HAMAP-Rule MF_00455
Metal binding2381Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2741Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2741Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2771Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3021Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding3131Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3151Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3451Magnesium 1 By similarity HAMAP-Rule MF_00455

Sequences

Sequence LengthMass (Da)Tools
S4XMX3 [UniParc].

Last modified October 16, 2013. Version 1.
Checksum: 0956AD5FD46A82E9

FASTA44349,802
        10         20         30         40         50         60 
MTVVIGDKEY FPGVGKIPYE GPESDNPLAF KWYDEKRVVA GKAMKDHFKF AVCYWHTFCG 

        70         80         90        100        110        120 
RGHDPFGPGT IHFPWDEGKD ALARARMKMD ASFEFITKLG ATHYCFHDID LVEEGDSRAE 

       130        140        150        160        170        180 
TSRRLQSIVE YAKQKQAQSG IKLLWGTANL FSNPRYMNGA STNPDFAVVA YAGAQLKDAL 

       190        200        210        220        230        240 
DATIALNGEN YVFWGGREGY MSLLNTDMKR EKDHFARFLT LARDYARSRG FKGTFFIEPK 

       250        260        270        280        290        300 
PMEPSKHQYD FDAETVIGFL RQHGLDKDFK LNLETNHATL AGHTMEHEMQ VAADAGMLGS 

       310        320        330        340        350        360 
IDANRGDYQN AWDTDQFPYN INETVEMMLI LLRSGGLQGG GVNFDAKRRR NSTDLIDTFH 

       370        380        390        400        410        420 
GHIGGMDVFA RALIIADDLI RKSPLEAMRK ARYASFDGGK GAEFEQGKLT LEQLAEIGNA 

       430        440 
GGEVKLTSGQ QELYENIVNR YIR 

« Hide

References

[1]"Extraordinary expansion of a Sorangium cellulosum genome from an alkaline milieu."
Han K., Li Z.F., Peng R., Zhu L.P., Zhou T., Wang L.G., Li S.G., Zhang X.B., Hu W., Wu Z.H., Qin N., Li Y.Z.
Sci. Rep. 3:2101-2101(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: So0157-2 EMBL AGP34522.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003969 Genomic DNA. Translation: AGP34522.1.
RefSeqYP_008148129.1. NC_021658.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAGP34522; AGP34522; SCE1572_08390.
GeneID16058504.
KEGGscu:SCE1572_08390.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01805.

Family and domain databases

Gene3D3.20.20.150. 1 hit.
HAMAPMF_00455. Xylose_isom_A.
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSPR00688. XYLOSISMRASE.
SUPFAMSSF51658. SSF51658. 1 hit.
TIGRFAMsTIGR02630. xylose_isom_A. 1 hit.
PROSITEPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameS4XMX3_SORCE
AccessionPrimary (citable) accession number: S4XMX3
Entry history
Integrated into UniProtKB/TrEMBL: October 16, 2013
Last sequence update: October 16, 2013
Last modified: June 11, 2014
This is version 7 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)