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Protein

RNA polymerase II transcription factor B subunit 2

Gene

GLAREA_12378

Organism
Glarea lozoyensis (strain ATCC 20868 / MF5171)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processDNA damage, DNA repairUniRule annotation, Transcription, Transcription regulationUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase II transcription factor B subunit 2UniRule annotation
Gene namesi
ORF Names:GLAREA_12378Imported
OrganismiGlarea lozoyensis (strain ATCC 20868 / MF5171)Imported
Taxonomic identifieri1116229 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaLeotiomycetesHelotialesHelotiaceaeGlarea
Proteomesi
  • UP000016922 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusUniRule annotation

Family & Domainsi

Sequence similaritiesi

Belongs to the TFB2 family.UniRule annotation

Phylogenomic databases

KOiK03144.
OrthoDBiEOG092C3703.

Family and domain databases

InterProiView protein in InterPro
IPR004598. TFIIH_p52/Tfb2.
PANTHERiPTHR13152. PTHR13152. 1 hit.
PfamiView protein in Pfam
PF03849. Tfb2. 1 hit.
TIGRFAMsiTIGR00625. tfb2. 1 hit.

Sequencei

Sequence statusi: Complete.

S3CZC4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASAVSNLAS FEYLEKLPGI TFRKLYLEPS TALAIFRRML PHLAKAFVMA
60 70 80 90 100
LLYMDKPFLL TDLDQWVQSN AKRQRDEALS TLSRLHIVTI SAPSRQEPQV
110 120 130 140 150
VSLTDAFRVS LRLALTGGGN HQSFGVPSSD AKSAGIELEF LDEYGRTQWE
160 170 180 190 200
GILHYVVSTG RSGAQPTAAV QQLLEAGNLV SRGRRSTEIT QAGFSFLLQE
210 220 230 240 250
VNAQVWTLLL LWLHHAKELG MDHVEILSFF FMLGSLELGK AYSIKTLKPT
260 270 280 290 300
QKSMLENLVD FGLVYIPPSV KDQFFPTRLA TTLTSDASAL RSITAGFESA
310 320 330 340 350
LSTGSGTAGF IIIETNYRLY AYTDSPLQIA VLALFTKLTT RYPNMVTGRV
360 370 380 390 400
TRESVYRAVS SGISSDQIIT YLSTHAHPEL LKASAAKGGG PVLPPTVVDQ
410 420 430 440 450
IRLWQIENER MKTTYGFLFK DFESTDEYKK LLKYADEIGV LTWASKTEEK
460
FFVSKVEQLK DYMKSLKAK
Length:469
Mass (Da):52,258
Last modified:September 18, 2013 - v1
Checksum:i7FF6D1D4DC9EBC01
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KE145361 Genomic DNA. Translation: EPE31622.1.
RefSeqiXP_008081351.1. XM_008083160.1.

Genome annotation databases

EnsemblFungiiEPE31622; EPE31622; GLAREA_12378.
GeneIDi19471419.
KEGGiglz:GLAREA_12378.

Similar proteinsi

Entry informationi

Entry nameiS3CZC4_GLAL2
AccessioniPrimary (citable) accession number: S3CZC4
Entry historyiIntegrated into UniProtKB/TrEMBL: September 18, 2013
Last sequence update: September 18, 2013
Last modified: October 25, 2017
This is version 16 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported