Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

R0KCX2 (R0KCX2_ANAPL) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 8. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names

Uncharacterized protein Ensembl ENSAPLP00000004601
Gene names
Name:F13A1 Ensembl ENSAPLP00000004601
ORF Names:Anapl_03796 EMBL EOB07792.1
OrganismAnas platyrhynchos (Domestic duck) (Anas boschas) [Complete proteome] EMBL EOB07792.1
Taxonomic identifier8839 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiTestudines + Archosauria groupArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeAnseriformesAnatidaeAnas

Protein attributes

Sequence length736 AA.
Sequence statusFragment.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 1 calcium ion per subunit By similarity. PIRSR PIRSR000459-2

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site3221 By similarity PIRSR PIRSR000459-1
Active site3811 By similarity PIRSR PIRSR000459-1
Active site4041 By similarity PIRSR PIRSR000459-1
Metal binding4441Calcium By similarity PIRSR PIRSR000459-2
Metal binding4461Calcium By similarity PIRSR PIRSR000459-2
Metal binding4931Calcium By similarity PIRSR PIRSR000459-2
Metal binding4981Calcium By similarity PIRSR PIRSR000459-2

Experimental info

Non-terminal residue7361 EMBL EOB07792.1

Sequences

Sequence LengthMass (Da)Tools
R0KCX2 [UniParc].

Last modified June 26, 2013. Version 1.
Checksum: 6D84142A7CA32477

FASTA73683,769
        10         20         30         40         50         60 
MSEPTSTDKE KKKPPLNGRR ALPSNNSNAE ENEVPEMDAF GLIPRGFNPK DYLCVVDIHM 

        70         80         90        100        110        120 
FKEPYEINKQ QHHTDKYYNP KLIVRRGQPF QIQIDFNRPY KPETDQFWLE YLIGRYPQPN 

       130        140        150        160        170        180 
KGTYIPILVG DVLKPGEWGA KIIHKENNSI RLSIMSSATC IVGKFRLYVA IWTPFGIIRT 

       190        200        210        220        230        240 
HRNSATDTYI LFNPWCQQDA VYLDDEKERE EYVLNDVGIV FHGDIDEIKL RSWSYGQFEE 

       250        260        270        280        290        300 
NILDACLFLM DKAELELSGR GNPIKICRVA SAVINSRDDN GVIAGSWDNT YTYGVAPSAW 

       310        320        330        340        350        360 
TGSVDILLEY YSSKQPVRYG QCWVFAGVFN TFLRCLGIPA RLITNYSSAH DNNANLQLDF 

       370        380        390        400        410        420 
FLDDEGQVDA KLTKDSIWNY HCWNEAWMTR PDLPVGFGGW QAVDGTPQET SDGMYRCGPA 

       430        440        450        460        470        480 
SVQAIKHGHV CFQFDAPFVF AEVNSDVVYS RREKNGAQII EKIDTTHIGK LIVTKGVGTD 

       490        500        510        520        530        540 
EMVEITEEYK FQEGSEEERL ALETAVMYGV KKQSTQDDMY QPQKDVEMDF QVQKAVLGSD 

       550        560        570        580        590        600 
FKVTITFRNK SRNSYTATTY LSGNIVFYTG VTKNEFKKHS FTVKLEPLMS SAFDVIITSS 

       610        620        630        640        650        660 
EYLSDLLDQA SFHFFVTARI NETGKILAAQ KATVLEIPSL RIKTQGEMVA DKEMSVIVEF 

       670        680        690        700        710        720 
TNPLKKTLED VTLRLEGPGV LKTMKKEFRQ IPSNSTLIWE VKCIPKRPGL RKLIASLNCD 

       730 
ALRHVYGELS IQIQKP 

« Hide

References

[1]"The genome sequence and transcriptome of duck provide insight into the interaction host."
Li N.
Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[2]"The duck genome and transcriptome provide insight into an avian influenza virus reservoir species."
Huang Y., Li Y., Burt D.W., Chen H., Zhang Y., Qian W., Kim H., Gan S., Zhao Y., Li J., Yi K., Feng H., Zhu P., Li B., Liu Q., Fairley S., Magor K.E., Du Z. expand/collapse author list , Hu X., Goodman L., Tafer H., Vignal A., Lee T., Kim K.W., Sheng Z., An Y., Searle S., Herrero J., Groenen M.A., Crooijmans R.P., Faraut T., Cai Q., Webster R.G., Aldridge J.R., Warren W.C., Bartschat S., Kehr S., Marz M., Stadler P.F., Smith J., Kraus R.H., Zhao Y., Ren L., Fei J., Morisson M., Kaiser P., Griffin D.K., Rao M., Pitel F., Wang J., Li N.
Nat. Genet. 45:776-783(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[3]Ensembl
Submitted (SEP-2013) to UniProtKB
Cited for: IDENTIFICATION.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
ADON01012010 Genomic DNA. No translation available.
ADON01012011 Genomic DNA. No translation available.
ADON01012012 Genomic DNA. No translation available.
KB742490 Genomic DNA. Translation: EOB07792.1.
RefSeqXP_005010762.1. XM_005010705.1.
XP_005010763.1. XM_005010706.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSAPLT00000005217; ENSAPLP00000004601; ENSAPLG00000005008.
GeneID101800928.
KEGGapla:101800928.

Organism-specific databases

CTD2162.

Phylogenomic databases

GeneTreeENSGT00740000115156.
KOK03917.

Family and domain databases

Gene3D2.60.40.10. 3 hits.
3.90.260.10. 1 hit.
InterProIPR023608. Gln_gamma-glutamylTfrase_euk.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR002931. Transglutaminase-like.
IPR008958. Transglutaminase_C.
IPR013808. Transglutaminase_CS.
IPR001102. Transglutaminase_N.
[Graphical view]
PANTHERPTHR11590. PTHR11590. 1 hit.
PfamPF00927. Transglut_C. 2 hits.
PF01841. Transglut_core. 1 hit.
PF00868. Transglut_N. 1 hit.
[Graphical view]
PIRSFPIRSF000459. TGM_EBP42. 1 hit.
SMARTSM00460. TGc. 1 hit.
[Graphical view]
SUPFAMSSF49309. SSF49309. 2 hits.
SSF81296. SSF81296. 1 hit.
PROSITEPS00547. TRANSGLUTAMINASES. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameR0KCX2_ANAPL
AccessionPrimary (citable) accession number: R0KCX2
Entry history
Integrated into UniProtKB/TrEMBL: June 26, 2013
Last sequence update: June 26, 2013
Last modified: April 16, 2014
This is version 8 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)