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Protein
Submitted name:

DNA/RNA-binding protein Kin17 conserved region-containing protein

Gene

T5A14.13

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
DNA/RNA-binding protein Kin17 conserved region-containing proteinImported
Submitted name:
Putative uncharacterized protein At1g55460Imported
Submitted name:
T5A14.13 proteinImported
Gene namesi
Name:T5A14.13Imported
Ordered Locus Names:At1g55460Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G55460.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

IntActiQ9ZVU5. 1 interaction.
STRINGi3702.AT1G55460.1.

Structurei

3D structure databases

SMRiQ9ZVU5. Positions 51-160, 293-411.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili156 – 18328Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG2837. Eukaryota.
ENOG410XRJ7. LUCA.
HOGENOMiHOG000178663.
KOiK13102.
OMAiCHISSES.
PhylomeDBiQ9ZVU5.

Family and domain databases

InterProiIPR019447. DNA/RNA-bd_Kin17_cons_domain.
[Graphical view]
PfamiPF10357. Kin17_mid. 1 hit.
[Graphical view]
SMARTiSM01253. Kin17_mid. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9ZVU5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGKNDFLTPK AIANRIKAKG LQKLRWYCQM CQKQCRDENG FKCHCMSESH
60 70 80 90 100
QRQMQVFGQN PTRVVDGYSE EFEQTFLDLM RRSHRFSRIA ATVVYNEYIN
110 120 130 140 150
DRHHVHMNST EWATLTEFIK HLGKTGKCKV EETPKGWFIT YIDRDSETLF
160 170 180 190 200
KERLKNKRVK SDLAEEEKQE REIQRQIERA AEKLNGGGGE GETSGNDEVV
210 220 230 240 250
DDGDDERKKD EDLRLKSGVK VGFALGGGVK QVATGKERGE SSKLLFGDEE
260 270 280 290 300
NDKVERGEKR KRSGDSGRSE KERRSALDEL MKEEEKKKER MNRKDYWLFE
310 320 330 340 350
GIIVKVMSKA LAEKGYYKQK GVVKKVIDNY VGEIKMLDSK HVLRVDQKEL
360 370 380 390 400
ETVLPQIGGM VKIVNGAYRG SNARLLGVDT EKFCAKVQIE KGVYDGRVIK
410
SIEYEDICKL A
Length:411
Mass (Da):47,288
Last modified:May 1, 1999 - v1
Checksum:i9DA6F8648002065D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005223 Genomic DNA. Translation: AAD10649.1.
AF360132 mRNA. Translation: AAK25842.1.
AY051011 mRNA. Translation: AAK93688.1.
CP002684 Genomic DNA. Translation: AEE33248.1.
PIRiH96596.
RefSeqiNP_564690.1. NM_104422.1.
UniGeneiAt.19003.

Genome annotation databases

EnsemblPlantsiAT1G55460.1; AT1G55460.1; AT1G55460.
GeneIDi841993.
GrameneiAT1G55460.1; AT1G55460.1; AT1G55460.
KEGGiath:AT1G55460.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005223 Genomic DNA. Translation: AAD10649.1.
AF360132 mRNA. Translation: AAK25842.1.
AY051011 mRNA. Translation: AAK93688.1.
CP002684 Genomic DNA. Translation: AEE33248.1.
PIRiH96596.
RefSeqiNP_564690.1. NM_104422.1.
UniGeneiAt.19003.

3D structure databases

SMRiQ9ZVU5. Positions 51-160, 293-411.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ9ZVU5. 1 interaction.
STRINGi3702.AT1G55460.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G55460.1; AT1G55460.1; AT1G55460.
GeneIDi841993.
GrameneiAT1G55460.1; AT1G55460.1; AT1G55460.
KEGGiath:AT1G55460.

Organism-specific databases

TAIRiAT1G55460.

Phylogenomic databases

eggNOGiKOG2837. Eukaryota.
ENOG410XRJ7. LUCA.
HOGENOMiHOG000178663.
KOiK13102.
OMAiCHISSES.
PhylomeDBiQ9ZVU5.

Family and domain databases

InterProiIPR019447. DNA/RNA-bd_Kin17_cons_domain.
[Graphical view]
PfamiPF10357. Kin17_mid. 1 hit.
[Graphical view]
SMARTiSM01253. Kin17_mid. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE.
  2. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
  4. "Arabidopsis Open Reading Frame (ORF) Clones."
    Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Etgu P., Lee J.M., Toriumi M., Yu G., Brooks S., Chao Q., Chen H., Karlin-Neumann G., Kim C., Lam B., Miranda M., Nguyen M., Palm C.J.
    , Shinn P., Southwick A., Davis R.W., Ecker J.R., Theologis A.
    Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  5. TAIR
    Swarbreck D., Lamesch P., Wilks C., Huala E.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  6. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. ColumbiaImported.

Entry informationi

Entry nameiQ9ZVU5_ARATH
AccessioniPrimary (citable) accession number: Q9ZVU5
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 1999
Last sequence update: May 1, 1999
Last modified: May 11, 2016
This is version 118 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.