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Q9ZVN4

- Y1500_ARATH

UniProt

Q9ZVN4 - Y1500_ARATH

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Protein

Probable tyrosine-protein phosphatase At1g05000

Gene

At1g05000

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

Catalytic activityi

Protein tyrosine phosphate + H2O = protein tyrosine + phosphate.PROSITE-ProRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei150 – 1501Phosphocysteine intermediatePROSITE-ProRule annotation

GO - Molecular functioni

  1. protein tyrosine phosphatase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protein phosphatase

Enzyme and pathway databases

BioCyciARA:GQT-352-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable tyrosine-protein phosphatase At1g05000 (EC:3.1.3.48)
Gene namesi
Ordered Locus Names:At1g05000
ORF Names:T7A14.14
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 1

Organism-specific databases

TAIRiAT1G05000.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 215215Probable tyrosine-protein phosphatase At1g05000PRO_0000094923Add
BLAST

Proteomic databases

PRIDEiQ9ZVN4.

Expressioni

Gene expression databases

ExpressionAtlasiQ9ZVN4. baseline and differential.
GenevestigatoriQ9ZVN4.

Interactioni

Subunit structurei

Homomultimer.Curated

Protein-protein interaction databases

BioGridi24583. 17 interactions.

Structurei

Secondary structure

1
215
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi60 – 634
Beta strandi66 – 705
Helixi74 – 8310
Beta strandi86 – 905
Helixi98 – 10710
Beta strandi110 – 1134
Helixi121 – 1233
Helixi128 – 13912
Helixi141 – 1433
Beta strandi145 – 1495
Beta strandi151 – 1555
Helixi156 – 16712
Helixi172 – 18312
Helixi184 – 1863
Helixi189 – 1968

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1XRIX-ray3.30A/B52-202[»]
2Q47X-ray3.30A/B52-202[»]
ProteinModelPortaliQ9ZVN4.
SMRiQ9ZVN4. Positions 52-202.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9ZVN4.

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi7 – 104Poly-Thr

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG2365.
HOGENOMiHOG000188365.
InParanoidiQ9ZVN4.
KOiK18045.
PhylomeDBiQ9ZVN4.

Family and domain databases

Gene3Di3.90.190.10. 1 hit.
InterProiIPR029021. Prot-tyrosine_phosphatase-like.
IPR016130. Tyr_Pase_AS.
IPR020428. Tyr_Pase_dualsp-Pase_euk.
IPR004861. Tyr_Pase_SIW14-like.
[Graphical view]
PfamiPF03162. Y_phosphatase2. 1 hit.
[Graphical view]
PRINTSiPR01911. PFDSPHPHTASE.
SUPFAMiSSF52799. SSF52799. 1 hit.
PROSITEiPS00383. TYR_PHOSPHATASE_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. Align

Note: A number of isoforms are produced. According to EST sequences.

Isoform 1 (identifier: Q9ZVN4-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MKLVEKTTTT EQDNGEDFCR TIIEVSEVNR NVFQAPGGEA DPFRVVSGEE
60 70 80 90 100
LHLIPPLNFS MVDNGIFRSG FPDSANFSFL QTLGLRSIIY LCPEPYPESN
110 120 130 140 150
LQFLKSNGIR LFQFGIEGNK EPFVNIPDHK IRMALKVLLD EKNHPVLIHC
160 170 180 190 200
KRGKHRTGCL VGCLRKLQKW CLTSIFDEYQ RFAAAKARVS DQRFMEIFDV
210
SSFSHIPMSF SCSIR
Length:215
Mass (Da):24,537
Last modified:May 1, 1999 - v1
Checksum:i24BCB3033CBCFA3A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC005322 Genomic DNA. Translation: AAC97999.1.
CP002684 Genomic DNA. Translation: AEE27777.1.
BT005210 mRNA. Translation: AAO63274.1.
PIRiG86183.
RefSeqiNP_171993.1. NM_100379.2. [Q9ZVN4-1]
UniGeneiAt.43231.

Genome annotation databases

EnsemblPlantsiAT1G05000.1; AT1G05000.1; AT1G05000. [Q9ZVN4-1]
GeneIDi839348.
KEGGiath:AT1G05000.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC005322 Genomic DNA. Translation: AAC97999.1 .
CP002684 Genomic DNA. Translation: AEE27777.1 .
BT005210 mRNA. Translation: AAO63274.1 .
PIRi G86183.
RefSeqi NP_171993.1. NM_100379.2. [Q9ZVN4-1 ]
UniGenei At.43231.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1XRI X-ray 3.30 A/B 52-202 [» ]
2Q47 X-ray 3.30 A/B 52-202 [» ]
ProteinModelPortali Q9ZVN4.
SMRi Q9ZVN4. Positions 52-202.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 24583. 17 interactions.

Proteomic databases

PRIDEi Q9ZVN4.

Protocols and materials databases

DNASUi 839348.
Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT1G05000.1 ; AT1G05000.1 ; AT1G05000 . [Q9ZVN4-1 ]
GeneIDi 839348.
KEGGi ath:AT1G05000.

Organism-specific databases

TAIRi AT1G05000.

Phylogenomic databases

eggNOGi COG2365.
HOGENOMi HOG000188365.
InParanoidi Q9ZVN4.
KOi K18045.
PhylomeDBi Q9ZVN4.

Enzyme and pathway databases

BioCyci ARA:GQT-352-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q9ZVN4.

Gene expression databases

ExpressionAtlasi Q9ZVN4. baseline and differential.
Genevestigatori Q9ZVN4.

Family and domain databases

Gene3Di 3.90.190.10. 1 hit.
InterProi IPR029021. Prot-tyrosine_phosphatase-like.
IPR016130. Tyr_Pase_AS.
IPR020428. Tyr_Pase_dualsp-Pase_euk.
IPR004861. Tyr_Pase_SIW14-like.
[Graphical view ]
Pfami PF03162. Y_phosphatase2. 1 hit.
[Graphical view ]
PRINTSi PR01911. PFDSPHPHTASE.
SUPFAMi SSF52799. SSF52799. 1 hit.
PROSITEi PS00383. TYR_PHOSPHATASE_1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "X-ray structure of a putative phosphoprotein phosphatase from Arabidopsis thaliana gene At1g05000."
    Center for eukaryotic structural genomics (CESG)
    Submitted (FEB-2005) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF 52-202.

Entry informationi

Entry nameiY1500_ARATH
AccessioniPrimary (citable) accession number: Q9ZVN4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: May 1, 1999
Last modified: October 29, 2014
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3