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Protein

RNA-binding protein CP29B, chloroplastic

Gene

CP29B

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Could be involved in splicing and/or processing of chloroplast RNA's.Curated

GO - Molecular functioni

  • mRNA binding Source: TAIR
  • poly(U) RNA binding Source: TAIR

GO - Biological processi

  • innate immune response Source: TAIR
  • mRNA processing Source: UniProtKB-KW
  • response to abscisic acid Source: TAIR
  • response to cold Source: TAIR

Keywordsi

Molecular functionRibonucleoprotein, RNA-binding
Biological processmRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
RNA-binding protein CP29B, chloroplasticCurated
Alternative name(s):
Ribonucleoprotein At2g37220
Gene namesi
Name:CP29BCurated
Ordered Locus Names:At2g37220
ORF Names:F3G5.1
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G37220
TAIRilocus:2049721 AT2G37220

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 62ChloroplastCombined sourcesAdd BLAST62
ChainiPRO_000003101963 – 289RNA-binding protein CP29B, chloroplasticAdd BLAST227

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei6Phosphoserine1 Publication1
Modified residuei12Phosphoserine1 Publication1
Modified residuei63N-acetylvalineCombined sources1

Post-translational modificationi

ADP-ribosylated by the Pseudomonas syringae type III effector HopU1. ADP-ribosylation reduces the ability of the protein to bind RNA.1 Publication
Phosphorylated on tyrosine residues after treatment with abscisic acid (ABA). Phosphorylation may reduce the ability of the protein to bind RNA.1 Publication

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

PaxDbiQ9ZUU4
PRIDEiQ9ZUU4

2D gel databases

SWISS-2DPAGEiQ9ZUU4

PTM databases

iPTMnetiQ9ZUU4

Expressioni

Gene expression databases

ExpressionAtlasiQ9ZUU4 differential
GenevisibleiQ9ZUU4 AT

Interactioni

Protein-protein interaction databases

BioGridi3643, 2 interactors
IntActiQ9ZUU4, 2 interactors
MINTiQ9ZUU4
STRINGi3702.AT2G37220.1

Structurei

3D structure databases

ProteinModelPortaliQ9ZUU4
SMRiQ9ZUU4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini91 – 169RRM 1PROSITE-ProRule annotationAdd BLAST79
Domaini204 – 282RRM 2PROSITE-ProRule annotationAdd BLAST79

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni170 – 203Linker (Gly-rich)Add BLAST34

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi4 – 57Ser-richAdd BLAST54
Compositional biasi168 – 171Poly-Pro4

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiENOG410IQX9 Eukaryota
ENOG4111MZ2 LUCA
HOGENOMiHOG000276232
InParanoidiQ9ZUU4
KOiK11294
OMAiKDHFRQC
OrthoDBiEOG09360LZZ
PhylomeDBiQ9ZUU4

Family and domain databases

Gene3Di3.30.70.330, 2 hits
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 2 hits
SMARTiView protein in SMART
SM00360 RRM, 2 hits
SUPFAMiSSF54928 SSF54928, 2 hits
PROSITEiView protein in PROSITE
PS50102 RRM, 2 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9ZUU4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAASASSLAL SSFNPKSLPF GVSRPASVSL LSPSLSFKLN SDSVSFSIAA
60 70 80 90 100
KWNSPASRFA RNVAITSEFE VEEDGFADVA PPKEQSFSAD LKLFVGNLPF
110 120 130 140 150
NVDSAQLAQL FESAGNVEMV EVIYDKITGR SRGFGFVTMS SVSEVEAAAQ
160 170 180 190 200
QFNGYELDGR PLRVNAGPPP PKREDGFSRG PRSSFGSSGS GYGGGGGSGA
210 220 230 240 250
GSGNRVYVGN LSWGVDDMAL ESLFSEQGKV VEARVIYDRD SGRSKGFGFV
260 270 280
TYDSSQEVQN AIKSLDGADL DGRQIRVSEA EARPPRRQY
Length:289
Mass (Da):30,718
Last modified:May 1, 1999 - v1
Checksum:iE500C3C0518369AD
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti60A → V in AAM66970 (Ref. 4) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005896 Genomic DNA Translation: AAC98043.1
AC006260 Genomic DNA Translation: AAM15222.1
CP002685 Genomic DNA Translation: AEC09369.1
AF370167 mRNA Translation: AAK43982.1
AY048251 mRNA Translation: AAK82513.1
AY059129 mRNA Translation: AAL15235.1
AY088648 mRNA Translation: AAM66970.1
PIRiA84790
RefSeqiNP_181259.1, NM_129278.4
UniGeneiAt.25300

Genome annotation databases

EnsemblPlantsiAT2G37220.1; AT2G37220.1; AT2G37220
GeneIDi818299
GrameneiAT2G37220.1; AT2G37220.1; AT2G37220
KEGGiath:AT2G37220

Similar proteinsi

Entry informationi

Entry nameiCP29B_ARATH
AccessioniPrimary (citable) accession number: Q9ZUU4
Secondary accession number(s): Q7GA50, Q8L941
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 11, 2001
Last sequence update: May 1, 1999
Last modified: May 23, 2018
This is version 129 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names

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