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Protein

Syntaxin-121

Gene

SYP121

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Vesicle trafficking protein that functions in the secretory pathway.By similarity

GO - Molecular functioni

  • protein anchor Source: TAIR
  • SNARE binding Source: GO_Central

GO - Biological processi

  • defense response Source: TAIR
  • defense response to fungus Source: TAIR
  • exocytosis Source: GO_Central
  • maintenance of protein location in plasma membrane Source: TAIR
  • negative regulation of defense response Source: TAIR
  • protein targeting to membrane Source: TAIR
  • protein targeting to plasma membrane Source: TAIR
  • regulation of stomatal movement Source: TAIR
  • response to abscisic acid Source: TAIR
  • response to fungus Source: TAIR
  • transpiration Source: TAIR
  • vesicle docking Source: GO_Central
  • vesicle fusion Source: GO_Central
  • vesicle-mediated transport Source: TAIR
Complete GO annotation...

Keywords - Biological processi

Protein transport, Transport

Enzyme and pathway databases

ReactomeiR-ATH-449147. Signaling by Interleukins.

Names & Taxonomyi

Protein namesi
Recommended name:
Syntaxin-121
Short name:
AtSYP121
Alternative name(s):
Syntaxin-related protein At-Syr1
Gene namesi
Name:SYP121
Synonyms:SYR1
Ordered Locus Names:At3g11820
ORF Names:F26K24.11
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G11820.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 285285CytoplasmicSequence analysisAdd
BLAST
Transmembranei286 – 30621Helical; Anchor for type IV membrane proteinSequence analysisAdd
BLAST
Topological domaini307 – 34640VesicularSequence analysisAdd
BLAST

GO - Cellular componenti

  • cell plate Source: TAIR
  • integral component of membrane Source: GO_Central
  • plasma membrane Source: TAIR
  • plasmodesma Source: TAIR
  • SNARE complex Source: GO_Central
  • trans-Golgi network Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 346346Syntaxin-121PRO_0000210246Add
BLAST
Isoform 2 (identifier: Q9ZSD4-2)
Initiator methionineiRemovedCombined sources

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei1 – 11N-acetylmethionineCombined sources
Isoform 2 (identifier: Q9ZSD4-2)
Modified residuei2 – 21N-acetylalanineCombined sources

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiQ9ZSD4.
PRIDEiQ9ZSD4.

PTM databases

iPTMnetiQ9ZSD4.
SwissPalmiQ9ZSD4.

Expressioni

Inductioni

Ninefold induction within 30-min exposure to abscisic acid and after 48 hours drought stress.

Gene expression databases

ExpressionAtlasiQ9ZSD4. baseline and differential.
GenevisibleiQ9ZSD4. AT.

Interactioni

Subunit structurei

Part of the t-SNARE complex. Binds to SNAP33.

GO - Molecular functioni

  • protein anchor Source: TAIR
  • SNARE binding Source: GO_Central

Protein-protein interaction databases

BioGridi5689. 69 interactions.
DIPiDIP-59829N.
IntActiQ9ZSD4. 59 interactions.
STRINGi3702.AT3G11820.1.

Structurei

3D structure databases

ProteinModelPortaliQ9ZSD4.
SMRiQ9ZSD4. Positions 44-306.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini214 – 27663t-SNARE coiled-coil homologyPROSITE-ProRule annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili41 – 7636Sequence analysisAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi289 – 29810Poly-Ile
Compositional biasi314 – 32714Gly-richAdd
BLAST

Sequence similaritiesi

Belongs to the syntaxin family.Curated
Contains 1 t-SNARE coiled-coil homology domain.PROSITE-ProRule annotation

Keywords - Domaini

Coiled coil, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0810. Eukaryota.
COG5074. LUCA.
HOGENOMiHOG000238904.
InParanoidiQ9ZSD4.
KOiK08486.
OMAiSCHEQSK.
PhylomeDBiQ9ZSD4.

Family and domain databases

InterProiIPR006012. Syntaxin/epimorphin_CS.
IPR006011. Syntaxin_N.
IPR010989. t-SNARE.
IPR000727. T_SNARE_dom.
[Graphical view]
PfamiPF05739. SNARE. 1 hit.
PF00804. Syntaxin. 1 hit.
[Graphical view]
SMARTiSM00503. SynN. 1 hit.
SM00397. t_SNARE. 1 hit.
[Graphical view]
SUPFAMiSSF47661. SSF47661. 1 hit.
PROSITEiPS00914. SYNTAXIN. 1 hit.
PS50192. T_SNARE. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative initiation. AlignAdd to basket

Isoform 1 (identifier: Q9ZSD4-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MNDLFSSSFS RFRSGEPSPR RDVAGGGDGV QMANPAGSTG GVNLDKFFED
60 70 80 90 100
VESVKEELKE LDRLNETLSS CHEQSKTLHN AKAVKDLRSK MDGDVGVALK
110 120 130 140 150
KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM
160 170 180 190 200
DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
210 220 230 240 250
AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA
260 270 280 290 300
QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
310 320 330 340
VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
Length:346
Mass (Da):37,957
Last modified:May 1, 1999 - v1
Checksum:i8A6E2390761A8446
GO
Isoform 2 (identifier: Q9ZSD4-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-31: Missing.

Show »
Length:315
Mass (Da):34,658
Checksum:iAAEE59276AFDDB53
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 3131Missing in isoform 2. CuratedVSP_057947Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF112864 mRNA. Translation: AAD11809.1.
AC016795 Genomic DNA. Translation: AAF23198.1.
CP002686 Genomic DNA. Translation: AEE75103.1.
CP002686 Genomic DNA. Translation: AEE75102.1.
AY093151 mRNA. Translation: AAM13150.1.
BT003393 mRNA. Translation: AAO30056.1.
AY087842 mRNA. Translation: AAM65395.1.
RefSeqiNP_187788.1. NM_112015.2. [Q9ZSD4-1]
NP_974288.1. NM_202559.2. [Q9ZSD4-2]
UniGeneiAt.11000.
At.70633.

Genome annotation databases

EnsemblPlantsiAT3G11820.1; AT3G11820.1; AT3G11820. [Q9ZSD4-1]
AT3G11820.2; AT3G11820.2; AT3G11820. [Q9ZSD4-2]
GeneIDi820355.
KEGGiath:AT3G11820.

Keywords - Coding sequence diversityi

Alternative initiation

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF112864 mRNA. Translation: AAD11809.1.
AC016795 Genomic DNA. Translation: AAF23198.1.
CP002686 Genomic DNA. Translation: AEE75103.1.
CP002686 Genomic DNA. Translation: AEE75102.1.
AY093151 mRNA. Translation: AAM13150.1.
BT003393 mRNA. Translation: AAO30056.1.
AY087842 mRNA. Translation: AAM65395.1.
RefSeqiNP_187788.1. NM_112015.2. [Q9ZSD4-1]
NP_974288.1. NM_202559.2. [Q9ZSD4-2]
UniGeneiAt.11000.
At.70633.

3D structure databases

ProteinModelPortaliQ9ZSD4.
SMRiQ9ZSD4. Positions 44-306.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi5689. 69 interactions.
DIPiDIP-59829N.
IntActiQ9ZSD4. 59 interactions.
STRINGi3702.AT3G11820.1.

PTM databases

iPTMnetiQ9ZSD4.
SwissPalmiQ9ZSD4.

Proteomic databases

PaxDbiQ9ZSD4.
PRIDEiQ9ZSD4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G11820.1; AT3G11820.1; AT3G11820. [Q9ZSD4-1]
AT3G11820.2; AT3G11820.2; AT3G11820. [Q9ZSD4-2]
GeneIDi820355.
KEGGiath:AT3G11820.

Organism-specific databases

TAIRiAT3G11820.

Phylogenomic databases

eggNOGiKOG0810. Eukaryota.
COG5074. LUCA.
HOGENOMiHOG000238904.
InParanoidiQ9ZSD4.
KOiK08486.
OMAiSCHEQSK.
PhylomeDBiQ9ZSD4.

Enzyme and pathway databases

ReactomeiR-ATH-449147. Signaling by Interleukins.

Miscellaneous databases

PROiQ9ZSD4.

Gene expression databases

ExpressionAtlasiQ9ZSD4. baseline and differential.
GenevisibleiQ9ZSD4. AT.

Family and domain databases

InterProiIPR006012. Syntaxin/epimorphin_CS.
IPR006011. Syntaxin_N.
IPR010989. t-SNARE.
IPR000727. T_SNARE_dom.
[Graphical view]
PfamiPF05739. SNARE. 1 hit.
PF00804. Syntaxin. 1 hit.
[Graphical view]
SMARTiSM00503. SynN. 1 hit.
SM00397. t_SNARE. 1 hit.
[Graphical view]
SUPFAMiSSF47661. SSF47661. 1 hit.
PROSITEiPS00914. SYNTAXIN. 1 hit.
PS50192. T_SNARE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "A tobacco syntaxin with a role in hormonal control of guard cell ion channels."
    Leyman B., Geelen D., Quintero F.J., Blatt M.R.
    Science 283:537-540(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
    Strain: cv. Columbia.
  2. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
    Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
    , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
    Strain: cv. Columbia.
  5. "Full-length cDNA from Arabidopsis thaliana."
    Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
  6. "Protein-binding partners of the tobacco syntaxin NtSyr1."
    Kargul J., Gansel X., Tyrrell M., Sticher L., Blatt M.R.
    FEBS Lett. 508:253-258(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH SNAP33.
  7. "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks."
    Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A., Grossmann J., Gruissem W., Baginsky S.
    Plant Physiol. 150:889-903(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  8. "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features."
    Bienvenut W.V., Sumpton D., Martinez A., Lilla S., Espagne C., Meinnel T., Giglione C.
    Mol. Cell. Proteomics 11:M111.015131-M111.015131(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT MET-1, ACETYLATION [LARGE SCALE ANALYSIS] AT ALA-2 (ISOFORM 2), CLEAVAGE OF INITIATOR METHIONINE [LARGE SCALE ANALYSIS] (ISOFORM 2), IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiSY121_ARATH
AccessioniPrimary (citable) accession number: Q9ZSD4
Secondary accession number(s): F4J7G9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 12, 2003
Last sequence update: May 1, 1999
Last modified: June 8, 2016
This is version 138 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.