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Protein

VAMP-like protein YKT61

Gene

YKT61

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

May be involved in the secretory pathway.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processProtein transport, Transport

Enzyme and pathway databases

ReactomeiR-ATH-6807878. COPI-mediated anterograde transport.
R-ATH-6811438. Intra-Golgi traffic.

Names & Taxonomyi

Protein namesi
Recommended name:
VAMP-like protein YKT61
Short name:
AtYKT61
Alternative name(s):
Geranylgeranylated protein 1
Short name:
AtGP1
Gene namesi
Name:YKT61
Ordered Locus Names:At5g58060
ORF Names:K21L19.5, K21L19_40
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G58060.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002067481 – 196VAMP-like protein YKT61Add BLAST196
PropeptideiPRO_0000370846197 – 199Removed in mature formSequence analysis3

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Lipidationi195S-palmitoyl cysteineSequence analysis1
Modified residuei196Cysteine methyl esterSequence analysis1
Lipidationi196S-geranylgeranyl cysteineSequence analysis1

Keywords - PTMi

Lipoprotein, Methylation, Palmitate, Prenylation

Proteomic databases

PRIDEiQ9ZRD6.

PTM databases

iPTMnetiQ9ZRD6.

Expressioni

Gene expression databases

ExpressionAtlasiQ9ZRD6. baseline and differential.
GenevisibleiQ9ZRD6. AT.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

BioGridi21162. 9 interactors.

Structurei

3D structure databases

ProteinModelPortaliQ9ZRD6.
SMRiQ9ZRD6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini7 – 133LonginPROSITE-ProRule annotationAdd BLAST127
Domaini139 – 199v-SNARE coiled-coil homologyPROSITE-ProRule annotationAdd BLAST61

Sequence similaritiesi

Belongs to the synaptobrevin family.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

HOGENOMiHOG000189970.
InParanoidiQ9ZRD6.
KOiK08516.
PhylomeDBiQ9ZRD6.

Family and domain databases

InterProiView protein in InterPro
IPR011012. Longin-like_dom.
IPR010908. Longin_dom.
IPR001388. Synaptobrevin.
PfamiView protein in Pfam
PF13774. Longin. 1 hit.
PF00957. Synaptobrevin. 1 hit.
SMARTiView protein in SMART
SM01270. Longin. 1 hit.
SUPFAMiSSF64356. SSF64356. 1 hit.
PROSITEiView protein in PROSITE
PS50859. LONGIN. 1 hit.
PS00417. SYNAPTOBREVIN. 1 hit.
PS50892. V_SNARE. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.
Isoform 1 (identifier: Q9ZRD6-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MKITALLVLK CAPEASDPVI LSNASDVSHF GYFQRSSVKE FVVFVGRTVA
60 70 80 90 100
SRTPPSQRQS VQHEEYKVHA YNRNGLCAVG FMDDHYPVRS AFSLLNQVLD
110 120 130 140 150
EYQKSFGESW RSAKEDSNQP WPYLTEALNK FQDPAEADKL LKIQRELDET
160 170 180 190
KIILHKTIDS VLARGEKLDS LVEKSSDLSM ASQMFYKQAK KTNSCCTIL
Length:199
Mass (Da):22,544
Last modified:May 1, 1999 - v1
Checksum:i19642F929F3F2CCB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U64918 mRNA. Translation: AAD00112.1.
AB024029 Genomic DNA. Translation: BAB10997.1.
CP002688 Genomic DNA. Translation: AED96992.1.
AF325040 mRNA. Translation: AAG40392.1.
AF385703 mRNA. Translation: AAK60295.1.
AY133669 mRNA. Translation: AAM91499.1.
RefSeqiNP_200614.1. NM_125191.4. [Q9ZRD6-1]
UniGeneiAt.21115.
At.24479.

Genome annotation databases

EnsemblPlantsiAT5G58060.1; AT5G58060.1; AT5G58060. [Q9ZRD6-1]
GeneIDi835918.
GrameneiAT5G58060.1; AT5G58060.1; AT5G58060.
KEGGiath:AT5G58060.

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiYKT61_ARATH
AccessioniPrimary (citable) accession number: Q9ZRD6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 17, 2003
Last sequence update: May 1, 1999
Last modified: August 30, 2017
This is version 131 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families