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Protein

Pentatricopeptide repeat-containing protein At2g36730

Gene

PCMP-E44

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At2g36730
Gene namesi
Name:PCMP-E44
Ordered Locus Names:At2g36730
ORF Names:F13K3.13
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G36730.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 501501Pentatricopeptide repeat-containing protein At2g36730PRO_0000356047Add
BLAST

Proteomic databases

PaxDbiQ9ZQA1.
PRIDEiQ9ZQA1.

Expressioni

Gene expression databases

GenevisibleiQ9ZQA1. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G36730.1.

Structurei

3D structure databases

ProteinModelPortaliQ9ZQA1.
SMRiQ9ZQA1. Positions 30-440.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati77 – 11135PPR 1Add
BLAST
Repeati112 – 14635PPR 2Add
BLAST
Repeati147 – 17731PPR 3Add
BLAST
Repeati178 – 21235PPR 4Add
BLAST
Repeati213 – 24331PPR 5Add
BLAST
Repeati246 – 27631PPR 6Add
BLAST
Repeati277 – 31236PPR 7Add
BLAST
Repeati313 – 34331PPR 8Add
BLAST
Repeati349 – 37931PPR 9Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni384 – 46279Type E motifAdd
BLAST
Regioni463 – 49331Type E(+) motifAdd
BLAST

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated
Contains 9 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9ZQA1.
OMAiPRRSGNY.
OrthoDBiEOG09360AAM.
PhylomeDBiQ9ZQA1.

Family and domain databases

InterProiIPR002885. Pentatricopeptide_repeat.
[Graphical view]
PfamiPF01535. PPR. 2 hits.
PF13041. PPR_2. 2 hits.
PF13812. PPR_3. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 3 hits.
PROSITEiPS51375. PPR. 8 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9ZQA1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIWSSDSCFK SRKHQCLIFL KLCSSIKHLL QIHGQIHLSS LQNDSFIISE
60 70 80 90 100
LVRVSSLSLA KDLAFARTLL LHSSDSTPST WNMLSRGYSS SDSPVESIWV
110 120 130 140 150
YSEMKRRGIK PNKLTFPFLL KACASFLGLT AGRQIQVEVL KHGFDFDVYV
160 170 180 190 200
GNNLIHLYGT CKKTSDARKV FDEMTERNVV SWNSIMTALV ENGKLNLVFE
210 220 230 240 250
CFCEMIGKRF CPDETTMVVL LSACGGNLSL GKLVHSQVMV RELELNCRLG
260 270 280 290 300
TALVDMYAKS GGLEYARLVF ERMVDKNVWT WSAMIVGLAQ YGFAEEALQL
310 320 330 340 350
FSKMMKESSV RPNYVTFLGV LCACSHTGLV DDGYKYFHEM EKIHKIKPMM
360 370 380 390 400
IHYGAMVDIL GRAGRLNEAY DFIKKMPFEP DAVVWRTLLS ACSIHHDEDD
410 420 430 440 450
EGIGEKVKKR LIELEPKRSG NLVIVANRFA EARMWAEAAE VRRVMKETKM
460 470 480 490 500
KKIAGESCLE LGGSFHRFFS GYDPRSEYVS IYELLDLFKF QLTCDYRLVS

E
Length:501
Mass (Da):56,951
Last modified:May 1, 1999 - v1
Checksum:iC0A52631698E1EB7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006282 Genomic DNA. Translation: AAD20149.1.
CP002685 Genomic DNA. Translation: AEC09292.1.
PIRiA84784.
RefSeqiNP_181211.1. NM_129228.1.
UniGeneiAt.66328.

Genome annotation databases

EnsemblPlantsiAT2G36730.1; AT2G36730.1; AT2G36730.
GeneIDi818245.
GrameneiAT2G36730.1; AT2G36730.1; AT2G36730.
KEGGiath:AT2G36730.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006282 Genomic DNA. Translation: AAD20149.1.
CP002685 Genomic DNA. Translation: AEC09292.1.
PIRiA84784.
RefSeqiNP_181211.1. NM_129228.1.
UniGeneiAt.66328.

3D structure databases

ProteinModelPortaliQ9ZQA1.
SMRiQ9ZQA1. Positions 30-440.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G36730.1.

Proteomic databases

PaxDbiQ9ZQA1.
PRIDEiQ9ZQA1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G36730.1; AT2G36730.1; AT2G36730.
GeneIDi818245.
GrameneiAT2G36730.1; AT2G36730.1; AT2G36730.
KEGGiath:AT2G36730.

Organism-specific databases

TAIRiAT2G36730.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9ZQA1.
OMAiPRRSGNY.
OrthoDBiEOG09360AAM.
PhylomeDBiQ9ZQA1.

Miscellaneous databases

PROiQ9ZQA1.

Gene expression databases

GenevisibleiQ9ZQA1. AT.

Family and domain databases

InterProiIPR002885. Pentatricopeptide_repeat.
[Graphical view]
PfamiPF01535. PPR. 2 hits.
PF13041. PPR_2. 2 hits.
PF13812. PPR_3. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 3 hits.
PROSITEiPS51375. PPR. 8 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPP188_ARATH
AccessioniPrimary (citable) accession number: Q9ZQA1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: May 1, 1999
Last modified: September 7, 2016
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.