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Protein

Probable WRKY transcription factor 3

Gene

WRKY3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity).By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi244 – 30865WRKY 1PROSITE-ProRule annotationAdd
BLAST
DNA bindingi409 – 47466WRKY 2PROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Probable WRKY transcription factor 3
Alternative name(s):
WRKY DNA-binding protein 3
Gene namesi
Name:WRKY3
Ordered Locus Names:At2g03340
ORF Names:T4M8.23
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G03340.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 513513Probable WRKY transcription factor 3PRO_0000133646Add
BLAST

Proteomic databases

PaxDbiQ9ZQ70.
PRIDEiQ9ZQ70.

Expressioni

Tissue specificityi

In young, mature and senescent leaves.1 Publication

Inductioni

By salicylic acid and during leaf senescence.2 Publications

Gene expression databases

ExpressionAtlasiQ9ZQ70. baseline and differential.
GenevisibleiQ9ZQ70. AT.

Interactioni

Protein-protein interaction databases

BioGridi265. 1 interaction.
STRINGi3702.AT2G03340.1.

Structurei

3D structure databases

ProteinModelPortaliQ9ZQ70.
SMRiQ9ZQ70. Positions 250-308, 405-475.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi74 – 829Poly-Ala
Compositional biasi191 – 1999Poly-Gln

Sequence similaritiesi

Contains 2 WRKY DNA-binding domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG410IDX2. Eukaryota.
ENOG410YBRT. LUCA.
HOGENOMiHOG000242409.
InParanoidiQ9ZQ70.
OMAiNHELPQK.
PhylomeDBiQ9ZQ70.

Family and domain databases

Gene3Di2.20.25.80. 2 hits.
InterProiIPR003657. WRKY_dom.
[Graphical view]
PfamiPF03106. WRKY. 2 hits.
[Graphical view]
SMARTiSM00774. WRKY. 2 hits.
[Graphical view]
SUPFAMiSSF118290. SSF118290. 2 hits.
PROSITEiPS50811. WRKY. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9ZQ70-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAEKEEKEPS KLKSSTGVSR PTISLPPRPF GEMFFSGGVG FSPGPMTLVS
60 70 80 90 100
NLFSDPDEFK SFSQLLAGAM ASPAAAAVAA AAVVATAHHQ TPVSSVGDGG
110 120 130 140 150
GSGGDVDPRF KQSRPTGLMI TQPPGMFTVP PGLSPATLLD SPSFFGLFSP
160 170 180 190 200
LQGTFGMTHQ QALAQVTAQA VQGNNVHMQQ SQQSEYPSST QQQQQQQQQA
210 220 230 240 250
SLTEIPSFSS APRSQIRASV QETSQGQRET SEISVFEHRS QPQNADKPAD
260 270 280 290 300
DGYNWRKYGQ KQVKGSDFPR SYYKCTHPAC PVKKKVERSL DGQVTEIIYK
310 320 330 340 350
GQHNHELPQK RGNNNGSCKS SDIANQFQTS NSSLNKSKRD QETSQVTTTE
360 370 380 390 400
QMSEASDSEE VGNAETSVGE RHEDEPDPKR RNTEVRVSEP VASSHRTVTE
410 420 430 440 450
PRIIVQTTSE VDLLDDGYRW RKYGQKVVKG NPYPRSYYKC TTPDCGVRKH
460 470 480 490 500
VERAATDPKA VVTTYEGKHN HDVPAARTSS HQLRPNNQHN TSTVNFNHQQ
510
PVARLRLKEE QIT
Length:513
Mass (Da):56,284
Last modified:May 1, 1999 - v1
Checksum:iF5042163E27EB8B1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF224701 mRNA. Translation: AAK28311.1.
AC006284 Genomic DNA. Translation: AAD17441.1.
CP002685 Genomic DNA. Translation: AEC05689.1.
PIRiC84447.
RefSeqiNP_178433.1. NM_126385.3.
UniGeneiAt.23587.

Genome annotation databases

EnsemblPlantsiAT2G03340.1; AT2G03340.1; AT2G03340.
GeneIDi814863.
GrameneiAT2G03340.1; AT2G03340.1; AT2G03340.
KEGGiath:AT2G03340.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF224701 mRNA. Translation: AAK28311.1.
AC006284 Genomic DNA. Translation: AAD17441.1.
CP002685 Genomic DNA. Translation: AEC05689.1.
PIRiC84447.
RefSeqiNP_178433.1. NM_126385.3.
UniGeneiAt.23587.

3D structure databases

ProteinModelPortaliQ9ZQ70.
SMRiQ9ZQ70. Positions 250-308, 405-475.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi265. 1 interaction.
STRINGi3702.AT2G03340.1.

Proteomic databases

PaxDbiQ9ZQ70.
PRIDEiQ9ZQ70.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G03340.1; AT2G03340.1; AT2G03340.
GeneIDi814863.
GrameneiAT2G03340.1; AT2G03340.1; AT2G03340.
KEGGiath:AT2G03340.

Organism-specific databases

TAIRiAT2G03340.

Phylogenomic databases

eggNOGiENOG410IDX2. Eukaryota.
ENOG410YBRT. LUCA.
HOGENOMiHOG000242409.
InParanoidiQ9ZQ70.
OMAiNHELPQK.
PhylomeDBiQ9ZQ70.

Miscellaneous databases

PROiQ9ZQ70.

Gene expression databases

ExpressionAtlasiQ9ZQ70. baseline and differential.
GenevisibleiQ9ZQ70. AT.

Family and domain databases

Gene3Di2.20.25.80. 2 hits.
InterProiIPR003657. WRKY_dom.
[Graphical view]
PfamiPF03106. WRKY. 2 hits.
[Graphical view]
SMARTiSM00774. WRKY. 2 hits.
[Graphical view]
SUPFAMiSSF118290. SSF118290. 2 hits.
PROSITEiPS50811. WRKY. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression."
    Yu D., Chen C., Chen Z.
    Plant Cell 13:1527-1540(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE, INDUCTION.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "A new member of the Arabidopsis WRKY transcription factor family, AtWRKY6, is associated with both senescence- and defence-related processes."
    Robatzek S., Somssich I.E.
    Plant J. 28:123-133(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: TISSUE SPECIFICITY, INDUCTION.

Entry informationi

Entry nameiWRKY3_ARATH
AccessioniPrimary (citable) accession number: Q9ZQ70
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 15, 2002
Last sequence update: May 1, 1999
Last modified: February 17, 2016
This is version 103 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.